Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABHF54_RS00370 Genome accession   NZ_CP157069
Coordinates   84160..85632 (-) Length   490 a.a.
NCBI ID   WP_347888421.1    Uniprot ID   -
Organism   Nitrosomonas europaea strain CCTCC M 2024693 isolate miaainf     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 79160..90632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF54_RS00340 (ABHF54_00340) mutY 79529..80659 (+) 1131 WP_347888419.1 A/G-specific adenine glycosylase -
  ABHF54_RS00345 (ABHF54_00345) - 80652..81278 (+) 627 WP_347888420.1 5-formyltetrahydrofolate cyclo-ligase -
  ABHF54_RS00350 (ABHF54_00350) - 81336..81950 (-) 615 WP_041356264.1 flavin prenyltransferase UbiX -
  ABHF54_RS00355 (ABHF54_00355) hprK 81990..82961 (-) 972 WP_011110711.1 HPr(Ser) kinase/phosphatase -
  ABHF54_RS00360 (ABHF54_00360) - 82948..83418 (-) 471 WP_011110712.1 PTS sugar transporter subunit IIA -
  ABHF54_RS00365 (ABHF54_00365) raiA 83650..83985 (-) 336 WP_011110713.1 ribosome-associated translation inhibitor RaiA -
  ABHF54_RS00370 (ABHF54_00370) rpoN/rpoN1 84160..85632 (-) 1473 WP_347888421.1 RNA polymerase factor sigma-54 Machinery gene
  ABHF54_RS00375 (ABHF54_00375) lptB 85639..86361 (-) 723 WP_281870939.1 LPS export ABC transporter ATP-binding protein -
  ABHF54_RS00380 (ABHF54_00380) lptA 86396..86890 (-) 495 WP_347888422.1 lipopolysaccharide transport periplasmic protein LptA -
  ABHF54_RS00385 (ABHF54_00385) lptC 87070..87651 (-) 582 WP_281870940.1 LPS export ABC transporter periplasmic protein LptC -
  ABHF54_RS00390 (ABHF54_00390) nadA 87936..89036 (+) 1101 WP_347888423.1 quinolinate synthase NadA -
  ABHF54_RS00395 (ABHF54_00395) - 89036..89860 (+) 825 WP_011110719.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 490 a.a.        Molecular weight: 55243.62 Da        Isoelectric Point: 4.7957

>NTDB_id=1003927 ABHF54_RS00370 WP_347888421.1 84160..85632(-) (rpoN/rpoN1) [Nitrosomonas europaea strain CCTCC M 2024693 isolate miaainf]
MKPTLQLKLNTGLTLTPQLQQSIRLLQLSTLELNQEITRLVQENPLLELDEGIDRDEFEIEGQDTSLSPPDLPAAAESDE
IPEIGKNTDIQSDWPDDPLYTDQEPFFDTRGRGNGSDEDHDQDFSRLISKPVSLREHLLSQISLGQYCERSKKIAELLVD
SLNDDGYLAQDLDELAGLLPPELGISTADLESALDYIQQLDPSGIGARNLQECLSLQLAALPDNTPLRDEALKLVNEHLE
SFAAKNFQLLKKVLDCNEACLQSIYQLITQLNPRPGDDFNATTARHVIPDVIVTKSDSGWGVRLNSDSVPRVRINSLYAG
ILKHHRTEATRMLMGQLKEARWLVRNLDQRMDTILRVSQAIVDRQQAFLEQGETAVRPLVMREIAATLGLHESTISRVTT
QKYMWTPHGIFELKYFFGSHIPAEAGESHSAIAIRGLIKRLIQDEDRRKPLNDNQISQMLAQQGIVIARRTVAKYREFMH
IPPTNLRKTL

Nucleotide


Download         Length: 1473 bp        

>NTDB_id=1003927 ABHF54_RS00370 WP_347888421.1 84160..85632(-) (rpoN/rpoN1) [Nitrosomonas europaea strain CCTCC M 2024693 isolate miaainf]
ATGAAACCAACCCTGCAACTCAAGCTCAACACCGGACTTACGCTGACACCGCAATTGCAGCAATCTATCCGGTTGCTGCA
ATTGTCTACGCTTGAGCTCAATCAGGAAATCACTCGTCTCGTACAGGAAAATCCCCTGCTCGAGCTGGATGAAGGGATCG
ATCGGGATGAGTTTGAAATCGAAGGACAGGATACTTCACTATCACCTCCGGATTTGCCTGCTGCAGCAGAAAGCGATGAA
ATCCCGGAAATCGGGAAAAATACGGATATCCAGAGTGACTGGCCGGATGACCCGTTGTACACCGATCAGGAACCTTTTTT
CGATACACGCGGGCGGGGCAATGGTAGTGATGAAGACCATGACCAGGATTTCTCCCGCTTGATCAGTAAACCTGTCAGTC
TGCGGGAACACCTGCTCTCACAAATCAGTCTGGGACAATACTGTGAGCGCAGCAAGAAAATCGCCGAACTGTTGGTGGAC
AGCCTCAATGATGATGGATACCTGGCTCAGGATCTGGACGAGCTTGCCGGATTGCTGCCACCCGAACTGGGAATCAGTAC
CGCAGATCTGGAATCAGCCCTGGATTACATTCAACAACTGGATCCGTCCGGTATAGGCGCGCGCAATCTGCAGGAATGTC
TGTCCTTACAACTTGCGGCATTACCGGACAATACGCCACTGCGAGATGAAGCTCTCAAGCTGGTAAACGAGCATCTGGAA
AGTTTTGCCGCTAAAAATTTCCAATTACTCAAAAAAGTGCTTGACTGTAACGAGGCCTGCCTGCAATCGATCTACCAGCT
GATTACTCAACTCAATCCCCGGCCCGGTGATGATTTCAATGCGACAACAGCACGACATGTCATCCCGGACGTAATCGTGA
CCAAATCAGACAGTGGCTGGGGAGTGCGGCTCAACTCCGATTCGGTTCCGCGCGTGCGCATCAACAGCTTGTATGCCGGT
ATTTTGAAACACCATCGCACTGAAGCAACCCGGATGCTGATGGGTCAGTTGAAAGAAGCCCGCTGGCTGGTCAGGAATCT
CGATCAACGGATGGATACCATACTTCGGGTCAGTCAGGCGATCGTCGATCGTCAGCAAGCTTTCCTGGAACAAGGCGAAA
CTGCCGTACGCCCCCTGGTCATGCGCGAAATCGCCGCGACGCTTGGGCTGCATGAATCGACCATCTCTCGTGTCACGACC
CAGAAATACATGTGGACGCCTCACGGCATTTTTGAACTCAAGTACTTTTTTGGCAGCCATATCCCCGCTGAAGCAGGGGA
ATCACATTCAGCCATCGCCATCCGTGGGCTGATCAAACGGCTGATTCAGGACGAAGATCGCAGAAAACCGCTCAATGACA
ATCAGATTTCGCAGATGTTGGCGCAGCAGGGTATCGTTATTGCTCGCCGTACGGTTGCAAAATATCGGGAGTTCATGCAT
ATTCCCCCGACTAATTTACGCAAAACACTCTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(125-318)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(334-488)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

47.421

100

0.488

Multiple sequence alignment