Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABGT20_RS16135 Genome accession   NZ_CP157038
Coordinates   3005528..3006172 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain AR01-03     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3000528..3011172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT20_RS16100 (ABGT20_16100) mrpB 3001720..3002151 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ABGT20_RS16105 (ABGT20_16105) mrpC 3002151..3002492 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  ABGT20_RS16110 (ABGT20_16110) mrpD 3002485..3003966 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  ABGT20_RS16115 (ABGT20_16115) mrpE 3003972..3004448 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ABGT20_RS16120 (ABGT20_16120) mrpF 3004448..3004732 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ABGT20_RS16125 (ABGT20_16125) mnhG 3004716..3005090 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  ABGT20_RS16130 (ABGT20_16130) yuxO 3005129..3005509 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  ABGT20_RS16135 (ABGT20_16135) comA 3005528..3006172 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ABGT20_RS16140 (ABGT20_16140) comP 3006253..3008214 (-) 1962 WP_276569535.1 histidine kinase Regulator
  ABGT20_RS16145 (ABGT20_16145) - 3008397..3009521 (+) 1125 WP_031601042.1 IS4-like element IS4Bsu1 family transposase -
  ABGT20_RS16150 (ABGT20_16150) - 3009651..3009980 (-) 330 WP_322808282.1 hypothetical protein -
  ABGT20_RS16155 (ABGT20_16155) comX 3009996..3010217 (-) 222 WP_014480704.1 competence pheromone ComX -
  ABGT20_RS16160 (ABGT20_16160) - 3010219..3011082 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1003907 ABGT20_RS16135 WP_003220716.1 3005528..3006172(-) (comA) [Bacillus subtilis strain AR01-03]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1003907 ABGT20_RS16135 WP_003220716.1 3005528..3006172(-) (comA) [Bacillus subtilis strain AR01-03]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment