Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABGT20_RS12940 Genome accession   NZ_CP157038
Coordinates   2402923..2403690 (-) Length   255 a.a.
NCBI ID   WP_014480292.1    Uniprot ID   -
Organism   Bacillus subtilis strain AR01-03     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2397923..2408690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT20_RS12920 (ABGT20_12920) ppsR 2398098..2398910 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  ABGT20_RS12925 (ABGT20_12925) ccpN 2398936..2399574 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  ABGT20_RS12930 (ABGT20_12930) glyS 2399707..2401746 (-) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  ABGT20_RS12935 (ABGT20_12935) glyQ 2401739..2402626 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ABGT20_RS12940 (ABGT20_12940) recO 2402923..2403690 (-) 768 WP_014480292.1 DNA repair protein RecO Machinery gene
  ABGT20_RS12945 (ABGT20_12945) yqzL 2403727..2403870 (-) 144 WP_003230053.1 YqzL family protein -
  ABGT20_RS12950 (ABGT20_12950) era 2404018..2404923 (-) 906 WP_003230051.1 GTPase Era -
  ABGT20_RS12955 (ABGT20_12955) cdd 2404904..2405314 (-) 411 WP_014480293.1 cytidine deaminase -
  ABGT20_RS12960 (ABGT20_12960) unpK 2405433..2405804 (-) 372 WP_014480294.1 diacylglycerol kinase family protein -
  ABGT20_RS12965 (ABGT20_12965) ybeY 2405785..2406258 (-) 474 WP_014480295.1 rRNA maturation RNase YbeY -
  ABGT20_RS12970 (ABGT20_12970) pgpH 2406259..2408394 (-) 2136 WP_014480296.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=1003894 ABGT20_RS12940 WP_014480292.1 2402923..2403690(-) (recO) [Bacillus subtilis strain AR01-03]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPLKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1003894 ABGT20_RS12940 WP_014480292.1 2402923..2403690(-) (recO) [Bacillus subtilis strain AR01-03]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGCTCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment