Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ABGT20_RS07850 Genome accession   NZ_CP157038
Coordinates   1485219..1485683 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain AR01-03     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1480219..1490683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT20_RS07830 (ABGT20_07830) kinA 1480690..1482519 (+) 1830 WP_014479653.1 sporulation histidine kinase KinA -
  ABGT20_RS07835 (ABGT20_07835) dapX 1482516..1483697 (-) 1182 WP_014479654.1 aminotransferase A -
  ABGT20_RS07840 (ABGT20_07840) - 1483899..1484060 (-) 162 WP_003245246.1 hypothetical protein -
  ABGT20_RS07845 (ABGT20_07845) cheV 1484264..1485175 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  ABGT20_RS07850 (ABGT20_07850) kre 1485219..1485683 (-) 465 WP_003232406.1 YkyB family protein Regulator
  ABGT20_RS07855 (ABGT20_07855) ykuC 1485809..1487101 (-) 1293 WP_014479656.1 MFS transporter -
  ABGT20_RS07860 (ABGT20_07860) ltdD 1487177..1487671 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  ABGT20_RS07865 (ABGT20_07865) ppeE 1487728..1488588 (-) 861 WP_003232400.1 metallophosphoesterase -
  ABGT20_RS07870 (ABGT20_07870) fadH 1488731..1489495 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=1003875 ABGT20_RS07850 WP_003232406.1 1485219..1485683(-) (kre) [Bacillus subtilis strain AR01-03]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1003875 ABGT20_RS07850 WP_003232406.1 1485219..1485683(-) (kre) [Bacillus subtilis strain AR01-03]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment