Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABGT19_RS18795 Genome accession   NZ_CP156993
Coordinates   3497247..3498638 (-) Length   463 a.a.
NCBI ID   WP_014481052.1    Uniprot ID   -
Organism   Bacillus subtilis strain AR03-27     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3492247..3503638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT19_RS18760 (ABGT19_18760) flgL 3492419..3493315 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  ABGT19_RS18765 (ABGT19_18765) flgK 3493326..3494849 (-) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  ABGT19_RS18770 (ABGT19_18770) flgN 3494868..3495350 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ABGT19_RS18775 (ABGT19_18775) flgM 3495366..3495632 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABGT19_RS18780 (ABGT19_18780) yvyF 3495713..3496132 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  ABGT19_RS18785 (ABGT19_18785) comFC 3496205..3496927 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  ABGT19_RS18790 (ABGT19_18790) comFB 3496891..3497187 (-) 297 WP_003227989.1 late competence protein ComFB -
  ABGT19_RS18795 (ABGT19_18795) comFA 3497247..3498638 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  ABGT19_RS18800 (ABGT19_18800) fakBA 3498745..3499590 (-) 846 WP_014481053.1 DegV family protein -
  ABGT19_RS18805 (ABGT19_18805) degU 3499688..3500377 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  ABGT19_RS18810 (ABGT19_18810) degS 3500460..3501617 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ABGT19_RS18815 (ABGT19_18815) - 3501834..3502487 (+) 654 WP_014481055.1 YigZ family protein -
  ABGT19_RS18820 (ABGT19_18820) - 3502487..3503479 (+) 993 WP_014481056.1 LCP family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52543.49 Da        Isoelectric Point: 9.7976

>NTDB_id=1003738 ABGT19_RS18795 WP_014481052.1 3497247..3498638(-) (comFA) [Bacillus subtilis strain AR03-27]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1003738 ABGT19_RS18795 WP_014481052.1 3497247..3498638(-) (comFA) [Bacillus subtilis strain AR03-27]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGGGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.056

100

0.981

Multiple sequence alignment