Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | ABGT19_RS13190 | Genome accession | NZ_CP156993 |
| Coordinates | 2446361..2446771 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain AR03-27 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2441728..2469657 | 2446361..2446771 | within | 0 |
Gene organization within MGE regions
Location: 2441728..2469657
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABGT19_RS13165 (ABGT19_13165) | yqeF | 2441895..2442626 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| ABGT19_RS13170 (ABGT19_13170) | cwlH | 2442878..2443630 (-) | 753 | WP_014480318.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| ABGT19_RS13175 (ABGT19_13175) | yqeD | 2443817..2444443 (+) | 627 | WP_014480319.1 | TVP38/TMEM64 family protein | - |
| ABGT19_RS13180 (ABGT19_13180) | gnd | 2444462..2445355 (-) | 894 | WP_014480320.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| ABGT19_RS13185 (ABGT19_13185) | yqeB | 2445606..2446328 (+) | 723 | WP_014480321.1 | hypothetical protein | - |
| ABGT19_RS13190 (ABGT19_13190) | nucA/comI | 2446361..2446771 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| ABGT19_RS13195 (ABGT19_13195) | sigK | 2446967..2447695 (+) | 729 | WP_013308023.1 | RNA polymerase sporulation sigma factor SigK | - |
| ABGT19_RS13200 (ABGT19_13200) | - | 2447695..2447793 (+) | 99 | WP_031600702.1 | hypothetical protein | - |
| ABGT19_RS13205 (ABGT19_13205) | - | 2447790..2448002 (-) | 213 | Protein_2552 | recombinase family protein | - |
| ABGT19_RS13210 (ABGT19_13210) | fumC | 2448221..2449609 (-) | 1389 | WP_014480325.1 | class II fumarate hydratase | - |
| ABGT19_RS13215 (ABGT19_13215) | - | 2449776..2450666 (+) | 891 | WP_014480326.1 | LysR family transcriptional regulator | - |
| ABGT19_RS13220 (ABGT19_13220) | - | 2451608..2452003 (+) | 396 | WP_014480327.1 | VOC family protein | - |
| ABGT19_RS13225 (ABGT19_13225) | - | 2452743..2453870 (-) | 1128 | WP_014480328.1 | Rap family tetratricopeptide repeat protein | - |
| ABGT19_RS13230 (ABGT19_13230) | - | 2454052..2455978 (+) | 1927 | Protein_2557 | T7SS effector LXG polymorphic toxin | - |
| ABGT19_RS13235 (ABGT19_13235) | - | 2455992..2456279 (+) | 288 | WP_014480331.1 | hypothetical protein | - |
| ABGT19_RS13240 (ABGT19_13240) | - | 2456682..2457122 (+) | 441 | WP_014480332.1 | SMI1/KNR4 family protein | - |
| ABGT19_RS13245 (ABGT19_13245) | - | 2457221..2457673 (+) | 453 | WP_014480333.1 | SMI1/KNR4 family protein | - |
| ABGT19_RS13250 (ABGT19_13250) | cdiI | 2457770..2458129 (+) | 360 | WP_014480334.1 | ribonuclease toxin immunity protein CdiI | - |
| ABGT19_RS13255 (ABGT19_13255) | - | 2458201..2458713 (+) | 513 | WP_014477426.1 | hypothetical protein | - |
| ABGT19_RS13260 (ABGT19_13260) | - | 2459021..2459224 (-) | 204 | WP_123772462.1 | hypothetical protein | - |
| ABGT19_RS13265 (ABGT19_13265) | - | 2459313..2459546 (+) | 234 | WP_224588641.1 | hypothetical protein | - |
| ABGT19_RS13270 (ABGT19_13270) | rttF | 2459814..2460391 (+) | 578 | Protein_2565 | suppressor of fused domain protein | - |
| ABGT19_RS13275 (ABGT19_13275) | - | 2460501..2460791 (+) | 291 | WP_014480337.1 | contact-dependent growth inhibition system immunity protein | - |
| ABGT19_RS13280 (ABGT19_13280) | istA | 2461632..2463179 (+) | 1548 | WP_014480339.1 | IS21 family transposase | - |
| ABGT19_RS13285 (ABGT19_13285) | istB | 2463176..2463934 (+) | 759 | WP_014479891.1 | IS21-like element helper ATPase IstB | - |
| ABGT19_RS13290 (ABGT19_13290) | - | 2464252..2464349 (-) | 98 | Protein_2569 | N-acetylmuramoyl-L-alanine amidase | - |
| ABGT19_RS13295 (ABGT19_13295) | - | 2464527..2464613 (+) | 87 | WP_072592549.1 | putative holin-like toxin | - |
| ABGT19_RS13300 (ABGT19_13300) | - | 2464900..2465112 (-) | 213 | WP_306136174.1 | phage tail tube protein | - |
| ABGT19_RS13305 (ABGT19_13305) | - | 2465139..2465318 (-) | 180 | Protein_2572 | phage tail tube protein | - |
| ABGT19_RS13310 (ABGT19_13310) | terS | 2465334..2465899 (-) | 566 | Protein_2573 | phage terminase small subunit | - |
| ABGT19_RS13315 (ABGT19_13315) | - | 2466026..2466331 (+) | 306 | WP_123772463.1 | hypothetical protein | - |
| ABGT19_RS13320 (ABGT19_13320) | - | 2466504..2466569 (-) | 66 | Protein_2575 | hypothetical protein | - |
| ABGT19_RS13325 (ABGT19_13325) | - | 2466724..2467203 (-) | 480 | WP_014480344.1 | hypothetical protein | - |
| ABGT19_RS13330 (ABGT19_13330) | - | 2467820..2468086 (+) | 267 | WP_033881358.1 | hypothetical protein | - |
| ABGT19_RS13335 (ABGT19_13335) | - | 2468225..2468377 (-) | 153 | WP_049832653.1 | XtrA/YqaO family protein | - |
| ABGT19_RS13340 (ABGT19_13340) | - | 2468460..2468582 (-) | 123 | Protein_2579 | RusA family crossover junction endodeoxyribonuclease | - |
| ABGT19_RS13345 (ABGT19_13345) | - | 2468545..2468793 (-) | 249 | Protein_2580 | hypothetical protein | - |
| ABGT19_RS13350 (ABGT19_13350) | - | 2468938..2469168 (-) | 231 | WP_224588644.1 | hypothetical protein | - |
| ABGT19_RS13355 (ABGT19_13355) | - | 2469477..2469657 (-) | 181 | Protein_2582 | hypothetical protein | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=1003722 ABGT19_RS13190 WP_009967785.1 2446361..2446771(-) (nucA/comI) [Bacillus subtilis strain AR03-27]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=1003722 ABGT19_RS13190 WP_009967785.1 2446361..2446771(-) (nucA/comI) [Bacillus subtilis strain AR03-27]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |