Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ABGT19_RS05820 Genome accession   NZ_CP156993
Coordinates   1118336..1118914 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain AR03-27     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1113336..1123914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT19_RS05800 (ABGT19_05800) hemAT 1113856..1115154 (-) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -
  ABGT19_RS05805 (ABGT19_05805) yhfW 1115293..1116821 (-) 1529 Protein_1077 FAD-dependent oxidoreductase -
  ABGT19_RS05810 (ABGT19_05810) yhxC 1116925..1117782 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  ABGT19_RS05815 (ABGT19_05815) yhzC 1117810..1118043 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ABGT19_RS05820 (ABGT19_05820) comK 1118336..1118914 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ABGT19_RS05825 (ABGT19_05825) yhxD 1118959..1119858 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  ABGT19_RS05830 (ABGT19_05830) yhjA 1120075..1120344 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  ABGT19_RS05835 (ABGT19_05835) yhjB 1120388..1121857 (-) 1470 WP_014479374.1 sodium:solute symporter -
  ABGT19_RS05840 (ABGT19_05840) yhjC 1121854..1122054 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ABGT19_RS05845 (ABGT19_05845) - 1122253..1122624 (-) 372 WP_014476361.1 hypothetical protein -
  ABGT19_RS05850 (ABGT19_05850) yhjE 1122776..1123399 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  ABGT19_RS05855 (ABGT19_05855) lepB 1123401..1123907 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1003687 ABGT19_RS05820 WP_003245329.1 1118336..1118914(+) (comK) [Bacillus subtilis strain AR03-27]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1003687 ABGT19_RS05820 WP_003245329.1 1118336..1118914(+) (comK) [Bacillus subtilis strain AR03-27]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment