Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EL305_RS12570 Genome accession   NZ_LR134528
Coordinates   2125918..2126886 (-) Length   322 a.a.
NCBI ID   WP_002237364.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC12163     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2120918..2131886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL305_RS12545 - 2122737..2122949 (-) 213 WP_126418131.1 hypothetical protein -
  EL305_RS12550 (NCTC12163_02100) - 2123044..2123382 (+) 339 WP_002237368.1 P-II family nitrogen regulator -
  EL305_RS12555 (NCTC12163_02101) - 2123441..2124199 (-) 759 WP_002237367.1 ABC transporter ATP-binding protein -
  EL305_RS12560 (NCTC12163_02102) - 2124283..2124909 (-) 627 WP_002237366.1 FmdE family protein -
  EL305_RS12565 (NCTC12163_02103) - 2124954..2125928 (-) 975 WP_002237365.1 iron chelate uptake ABC transporter family permease subunit -
  EL305_RS12570 (NCTC12163_02104) ceuB 2125918..2126886 (-) 969 WP_002237364.1 ABC transporter permease Machinery gene
  EL305_RS14615 - 2127027..2127134 (+) 108 Protein_2107 IS5/IS1182 family transposase -
  EL305_RS12575 (NCTC12163_02105) - 2127220..2128185 (-) 966 WP_002225862.1 siderophore ABC transporter substrate-binding protein -
  EL305_RS12580 (NCTC12163_02106) fetA 2128883..2131054 (-) 2172 WP_002237363.1 TonB-dependent siderophore receptor FetA/FrpB -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34369.67 Da        Isoelectric Point: 10.0380

>NTDB_id=1003685 EL305_RS12570 WP_002237364.1 2125918..2126886(-) (ceuB) [Neisseria meningitidis strain NCTC12163]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
ENEMLQMLGVWQQGDFSGVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIISRLMGDKLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1003685 EL305_RS12570 WP_002237364.1 2125918..2126886(-) (ceuB) [Neisseria meningitidis strain NCTC12163]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCGGACAGCCAGCAGGTTATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGTAACCGTTTTGTC
GAACCTTCTATGGCGGGCGCGGGTCAGAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGTTAATCGGGATGCTGGTGTTTATGCTGCTGATCCGCCGTCTGCCGC
CGACCGCGCAACTGATGGTGCCGCTGGTCGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACCTTTATCGCGTAT
GAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCAGGCGTACTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTATCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGGCTGATTATTGTGGCTTTGATTACGTCGCTGGTTATC
GTTACGGTCGGCAATATCCCGTTTATCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATGGGCGACAAGCTGCGACA
AAGCCTGCCTGCGGTGGCCTTGCTGGGCGCATCTTTGGTGTTGCTGTGCGATATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTGTTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388