Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   M744_RS10000 Genome accession   NZ_CP006471
Coordinates   2015139..2015873 (+) Length   244 a.a.
NCBI ID   WP_011242637.1    Uniprot ID   Q31NW2
Organism   Synechococcus elongatus UTEX 2973     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2010139..2020873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M744_RS09975 (M744_10480) - 2010977..2011516 (+) 540 WP_011242632.1 cytochrome b6-f complex iron-sulfur subunit -
  M744_RS09980 (M744_10485) petA 2011562..2012536 (+) 975 WP_011242633.1 cytochrome f -
  M744_RS09985 (M744_10490) lgt 2012620..2013489 (+) 870 WP_011377929.1 prolipoprotein diacylglyceryl transferase -
  M744_RS09990 (M744_10495) cobM 2013479..2014273 (+) 795 WP_011377928.1 precorrin-4 C(11)-methyltransferase -
  M744_RS09995 (M744_10500) - 2014242..2015111 (-) 870 WP_011377927.1 DMT family transporter -
  M744_RS10000 (M744_10505) ysxA/radC 2015139..2015873 (+) 735 WP_011242637.1 DNA repair protein RadC Machinery gene
  M744_RS10010 (M744_10515) - 2016097..2017362 (-) 1266 WP_011377926.1 pitrilysin family protein -
  M744_RS10015 (M744_10520) - 2017539..2018285 (+) 747 WP_011377925.1 phycocyanobilin:ferredoxin oxidoreductase -
  M744_RS10020 (M744_10525) - 2018374..2019474 (+) 1101 WP_011242640.1 HlyD family efflux transporter periplasmic adaptor subunit -
  M744_RS10025 (M744_10530) devC 2019458..2020636 (+) 1179 WP_011377924.1 ABC transporter permease DevC -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26275.22 Da        Isoelectric Point: 6.3868

>NTDB_id=100367 M744_RS10000 WP_011242637.1 2015139..2015873(+) (ysxA/radC) [Synechococcus elongatus UTEX 2973]
MATSGLRVADLPEDERPRERLMRSGASSLSTAELLAILLGTGQGPGGLSAVGLGQLLLSQLGEHQREPLRVLRQITVTEL
MQIPGIGPAKATAIAAAIELGKRIYQTTTSELLPITSPEAAAKALSADLMWAEQERFALLLLDVRHNLLAQRVLTIGTAT
ETLANPREIFREALRLGATRLIVAHNHPSGQVDPSSADLSLTEQLLQLGQALELPVLDHLILGQGHHRSLRDTTGLWQKF
PQGD

Nucleotide


Download         Length: 735 bp        

>NTDB_id=100367 M744_RS10000 WP_011242637.1 2015139..2015873(+) (ysxA/radC) [Synechococcus elongatus UTEX 2973]
ATGGCGACTTCTGGTTTGCGCGTGGCTGATCTGCCCGAAGATGAGCGACCGCGGGAACGGCTGATGCGATCGGGAGCTAG
CAGCCTCTCGACGGCTGAACTGCTCGCGATCTTGTTAGGAACGGGACAAGGACCGGGTGGATTGTCCGCCGTTGGGCTGG
GTCAACTGCTCCTCAGTCAGCTAGGAGAACACCAACGCGAACCGTTGCGCGTTCTGCGTCAAATTACGGTTACTGAACTG
ATGCAAATTCCTGGAATTGGTCCAGCTAAGGCGACAGCGATCGCTGCTGCGATCGAGTTAGGTAAGCGCATCTATCAAAC
GACGACGAGTGAGTTGCTACCGATCACGTCGCCGGAAGCGGCTGCCAAGGCTCTCAGCGCCGATCTGATGTGGGCGGAGC
AGGAACGCTTTGCCCTGCTGCTGTTGGATGTTCGCCATAACCTCTTGGCCCAACGGGTGCTGACCATCGGGACCGCCACT
GAAACCTTGGCCAATCCCCGCGAAATTTTCCGAGAAGCCCTACGCCTCGGGGCAACTCGCTTGATCGTGGCCCATAACCA
TCCGTCTGGGCAGGTCGATCCCAGCAGTGCCGACCTGAGTTTGACGGAACAACTACTGCAACTCGGGCAAGCGCTGGAGC
TACCCGTGCTCGATCACCTCATTTTGGGCCAAGGACACCATCGCAGCTTGCGCGACACCACAGGGCTTTGGCAGAAATTT
CCACAGGGCGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(115-232)

UPF0758 N-terminal (UPF0758_N)

(9-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31NW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.767

93.033

0.361

Multiple sequence alignment