Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ABGT21_RS12410 Genome accession   NZ_CP156990
Coordinates   2311454..2312257 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain AR02-06     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2306454..2317257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT21_RS12385 (ABGT21_12385) glpQ 2307592..2308323 (-) 732 WP_014480224.1 glycerophosphodiester phosphodiesterase -
  ABGT21_RS12390 (ABGT21_12390) yqiI 2308402..2309022 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  ABGT21_RS12395 (ABGT21_12395) - 2309042..2309338 (-) 297 WP_014480225.1 hypothetical protein -
  ABGT21_RS12400 (ABGT21_12400) - 2309646..2309798 (+) 153 WP_014480226.1 hypothetical protein -
  ABGT21_RS12405 (ABGT21_12405) yqiG 2309871..2310989 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  ABGT21_RS12410 (ABGT21_12410) spo0A 2311454..2312257 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ABGT21_RS12415 (ABGT21_12415) spoIVB 2312533..2313813 (-) 1281 WP_014480228.1 SpoIVB peptidase -
  ABGT21_RS12420 (ABGT21_12420) recN 2313988..2315718 (-) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  ABGT21_RS12425 (ABGT21_12425) argR 2315755..2316204 (-) 450 WP_003230265.1 arginine repressor ArgR -
  ABGT21_RS12430 (ABGT21_12430) yqxC 2316302..2317147 (-) 846 WP_031600677.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1003628 ABGT21_RS12410 WP_003226427.1 2311454..2312257(-) (spo0A) [Bacillus subtilis strain AR02-06]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1003628 ABGT21_RS12410 WP_003226427.1 2311454..2312257(-) (spo0A) [Bacillus subtilis strain AR02-06]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment