Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   EL323_RS08405 Genome accession   NZ_LR134526
Coordinates   1425830..1428019 (-) Length   729 a.a.
NCBI ID   WP_080542351.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10026     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1420830..1433019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL323_RS08395 - 1423707..1424663 (+) 957 Protein_1392 IS110 family transposase -
  EL323_RS08400 (NCTC10026_01402) - 1424711..1425784 (+) 1074 WP_080542350.1 NnrS family protein -
  EL323_RS08405 (NCTC10026_01403) priA 1425830..1428019 (-) 2190 WP_080542351.1 primosomal protein N' Machinery gene
  EL323_RS08410 (NCTC10026_01404) - 1428158..1428940 (+) 783 WP_002214390.1 DsbC family protein -
  EL323_RS08415 (NCTC10026_01405) - 1429353..1431287 (-) 1935 WP_080542352.1 MacB family efflux pump subunit -
  EL323_RS08420 (NCTC10026_01406) - 1431353..1432531 (-) 1179 WP_002230317.1 MacA family efflux pump subunit -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81029.68 Da        Isoelectric Point: 7.3903

>NTDB_id=1003587 EL323_RS08405 WP_080542351.1 1425830..1428019(-) (priA) [Neisseria meningitidis strain NCTC10026]
MIYHRIAVNVPLSDGLLTYSHSDPLPQGTRVLVPFRNKTVVGMVWETDIAPDMDTARILSVRTAFSDEPLLPESWRDLLA
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQVNAQA
AKLIEDWAVQGWIETTEAAKPVLRSCNGQASHSEFVLNADQRQASDAIQTALGRFQPFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLHSRMAAGRRTQDYLSAMSGQAKLVIGTRLAVFTPMDDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQSGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDILNVGRLKLD
NSFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPYKCPDCG
NQDLTAVGHGTQRVEETLRAFLPKAAVVRVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYVVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAVEFLNAAKETLVPLLPESVSQFGAAPMLMVRLAERERAQIFLESPSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=1003587 EL323_RS08405 WP_080542351.1 1425830..1428019(-) (priA) [Neisseria meningitidis strain NCTC10026]
ATGATCTACCACCGCATCGCCGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCCCATTCCGATCCGCTGCCGCA
GGGCACGCGGGTGCTTGTGCCTTTCCGCAATAAAACCGTGGTCGGGATGGTGTGGGAAACGGATATTGCGCCGGATATGG
ATACGGCGCGGATTTTGAGCGTTCGGACGGCCTTTTCGGACGAGCCGCTGCTGCCCGAAAGCTGGCGTGATTTGTTGGCG
TTTACGTCGCGTTATTACCACTATCCGACCGGGCAGGCAGTATTTGCCGCATTGCCGCAAGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCCTTGTTTTACGCGTTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCGCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCGGCGTTGAAGCAGGTAAACGCGCAGGCG
GCGAAATTGATTGAAGATTGGGCGGTGCAGGGTTGGATTGAAACGACGGAAGCGGCGAAACCCGTTTTAAGGTCGTGTAA
TGGGCAGGCTTCGCACTCTGAATTTGTGTTGAATGCCGACCAACGGCAGGCTTCCGATGCCATTCAGACGGCATTGGGAC
GCTTCCAGCCGTTTCTGCTGTACGGCATCACCGGCAGCGGCAAGACCGAGGTGTATTTTGATGCGATGGCGAAAGTGTTG
GCGCAGGGGCGGCAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGGAAAACCGTTT
TGCCGACGTACCGACCGCCGTGTTGCACAGCCGGATGGCGGCAGGCAGGCGCACGCAGGATTATCTGAGCGCGATGTCGG
GGCAGGCGAAGCTGGTCATCGGCACGCGGCTGGCGGTGTTCACGCCGATGGATGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAGGACAACGAATTGCGCTATCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGAG
CGGCTGCCCCGTCGTGTTGGGCAGTGCCACGCCCAGCTTGGAGAGCTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATACCGCCGCGCAACTGCCGCAAGTGGACATTCTCAACGTAGGCCGTCTGAAACTTGAC
AACAGCTTCTCGCCGCAAGCCTTGCAACTTTTGAAGCAGAACTTTGAAGCGGGCGGTATGTCGTTGGTGTACCTCAACCG
TCGCGGCTTCGCGCCCGCGCTGTTTTGCGGCGACTGCGGTCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGC
TGCACCAACGCGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAACCCATCCCGTACAAATGCCCCGACTGCGGT
AACCAAGACCTGACCGCCGTCGGCCACGGCACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTCCTGCCCAAGGCAGCCGT
CGTCCGCGTCGATAGGGACAGTACGGCGCACAAAAACGACTGGGCGGATTTGTACCGCCGCATCGCCGACAACGAAATCG
ATATTCTGGTCGGCACGCAGATGCTCGCCAAAGGTCATGATTTCGCGCGGCTCAACCTCGTTATCGTATTGAACGCCGAC
GGCAGCCTGTACAGCGCGGATTTCCGCGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAGGTGTCCGGCAGGGCGGGGCG
CGCCGACAAGCCCGGCAAGGTGCTGATACAGACCCAACTGCCCGAACATCCCGTCTTCGCCGCCGTCAAAGCGCAGGACT
ACGTCGTGTTTGCCGAAAACGAATTGAATGAGCGGCAAATGTTCGCCATGCCGCCCTTCGGTTTCCAGACCGCCGTCCGC
GCCGACGCGCCGCGCGTTGCCGATGCGGTGGAGTTTCTCAACGCCGCCAAAGAAACCCTGGTCCCGCTGTTGCCCGAAAG
CGTTTCACAGTTCGGCGCCGCCCCGATGCTGATGGTGCGCCTCGCCGAACGCGAACGCGCGCAAATCTTCCTCGAATCCC
CGTCCCGACAGGATTTGCACCGCGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACAGGGACGGCAAAATCAGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

DEAD/DEAH box helicase (DEAD)

(207-361)

Helicase conserved C-terminal domain (Helicase_C)

(516-588)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.107

100

0.369

Multiple sequence alignment