Detailed information NTG0100355

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: M744_RS05805
• Genome accession: NZ_CP006471
• Coordinates: 1118132..1119364 (+)
• Length: 410 a.a.
• NCBI ID: WP_011378299.1
• Uniprot ID: Q31LH0
• Organism: Synechococcus elongatus UTEX 2973
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1113132..1124364

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M744_RS05790 (M744_06030)	grpE	1114048..1114671 (-)	624	WP_011378302.1	nucleotide exchange factor GrpE	-
M744_RS05795 (M744_06035)	pilB/pilB1	1114948..1116948 (+)	2001	WP_011378301.1	GspE/PulE family protein	Machinery gene
M744_RS05800 (M744_06040)	pilT	1117019..1118107 (+)	1089	WP_011378300.1	type IV pilus twitching motility protein PilT	Machinery gene
M744_RS05805 (M744_06045)	pilC	1118132..1119364 (+)	1233	WP_011378299.1	type II secretion system F family protein	Machinery gene
M744_RS05810 (M744_06050)	-	1119370..1119924 (+)	555	WP_011244335.1	hypothetical protein	-
M744_RS05815 (M744_06055)	-	1119889..1121136 (-)	1248	WP_011378298.1	NAD(P)/FAD-dependent oxidoreductase	-
M744_RS05820 (M744_06060)	dusA	1121163..1122194 (+)	1032	WP_011244337.1	tRNA dihydrouridine(20/20a) synthase DusA	-
M744_RS13720	-	1122291..1122545 (+)	255	WP_011378297.1	helix-hairpin-helix domain-containing protein	-
M744_RS05825 (M744_06070)	pheS	1122669..1123670 (-)	1002	WP_011244339.1	phenylalanine--tRNA ligase subunit alpha	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45123.05 Da
• Isoelectric Point: 9.1701

>NTDB_id=100355 M744_RS05805 WP_011378299.1 1118132..1119364(+) (pilC) [Synechococcus elongatus UTEX 2973]
MPTYVAQVRDSRGALRKQRIQAGNVREARVGLRQQGFLVQSIDESAGLSLGGLSSFNLEEATSKVTVKDMALFSRQLSSL
VDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLNLSDSMRKFPKVFDGLYVAMIQAGETGGVLDDVLNRLSKLLE
DMSRLRNQMKSAMTYPMAVFVIAILVFLGMTIFIIPTFAGIFEDQGAELPGFTLLLLSISQLLRTPIFWGFFLIFLFGSI
FVFKQYYSTPPGRLSVDNLVLRLPVLGEMIQKAATARFCRTFGSLTRAGVPIMTALEIVRDTAGNQAIARSIDAARMEVQ
TGGMMSVALSRYRVFPLMALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGSILLAMYLP
MFSIFDQIKG

Nucleotide

• Length: 1233 bp

>NTDB_id=100355 M744_RS05805 WP_011378299.1 1118132..1119364(+) (pilC) [Synechococcus elongatus UTEX 2973]
ATGCCGACATATGTTGCTCAGGTTCGTGATAGCCGAGGAGCTCTTCGCAAGCAGCGCATCCAAGCAGGAAATGTTCGTGA
AGCGCGGGTTGGATTGCGCCAGCAAGGGTTTTTGGTTCAGTCAATCGATGAGTCTGCTGGATTGTCTCTGGGCGGGTTAA
GTAGTTTTAATCTCGAAGAAGCGACGAGTAAGGTCACTGTCAAAGACATGGCCCTTTTCTCGCGGCAGCTTTCATCCTTG
GTCGATGCGGGGGTTCCAATTGTTAGAGCCCTAGGATTGCTGACTGAACAGACACGTAATCCCAAGCTTCGTAAAACCCT
GAAGCAGATTAATATCGATGTGCAAGAGGGCTTAAATCTCTCGGACTCGATGCGTAAGTTCCCGAAAGTTTTCGATGGTC
TCTACGTAGCGATGATTCAAGCTGGAGAGACAGGTGGCGTCTTAGATGACGTCCTCAACCGGCTTTCCAAACTACTGGAA
GATATGTCGAGATTGCGCAACCAGATGAAGTCTGCAATGACTTATCCGATGGCAGTCTTTGTGATTGCAATTCTTGTGTT
TTTAGGGATGACTATTTTTATCATCCCAACCTTTGCAGGAATTTTTGAAGACCAAGGAGCGGAGTTGCCTGGCTTCACAT
TGCTGTTGCTGTCAATTAGCCAGCTATTGAGAACACCGATCTTTTGGGGCTTCTTCCTGATCTTTCTATTTGGATCAATC
TTTGTCTTTAAACAATACTATTCAACTCCACCTGGCCGCCTCAGTGTAGACAACCTAGTGCTACGCCTGCCAGTTTTGGG
AGAGATGATTCAGAAGGCTGCCACAGCTCGCTTCTGCCGAACCTTTGGTTCACTCACAAGGGCAGGGGTGCCGATTATGA
CTGCTCTTGAAATCGTGCGAGATACCGCAGGGAATCAGGCGATCGCTCGCTCAATCGATGCAGCCCGGATGGAAGTACAG
ACTGGCGGCATGATGAGTGTGGCACTGTCGAGATATCGGGTCTTCCCCTTGATGGCTCTCAGCATGATTACGATTGGGGA
AGAGACGGGTGAACTTGACACCATGGTAAACAAAGTGGCTGACTTCTATGAAGATGAAGTCGAGCAAGCGGTCAAGGGTT
TGACCAGTTTGCTAGAGCCGATCATGATTGTGCTGGTAGGCGGTATTGTCGGCTCGATTTTGCTGGCGATGTATCTGCCA
ATGTTCAGCATTTTCGACCAGATTAAGGGGTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (278-400)

• Type II secretion system (T2SS), protein F (T2SSF) (73-196)

3D structure

• AlphaFold DB: Q31LH0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	42.469	98.78	0.42