Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QUE31_RS05070 Genome accession   NZ_AP027254
Coordinates   1059172..1059801 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain JNE120442     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054172..1064801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE31_RS05050 (JNE120442_09590) ycbZ 1054573..1056333 (-) 1761 WP_000156476.1 Lon protease family protein -
  QUE31_RS05055 (JNE120442_09600) matP 1056519..1056971 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QUE31_RS05060 (JNE120442_09610) ompA 1057047..1058087 (-) 1041 WP_001314606.1 porin OmpA -
  QUE31_RS05065 (JNE120442_09630) sulA 1058444..1058953 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  QUE31_RS05070 (JNE120442_09640) sxy/tfoX 1059172..1059801 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QUE31_RS05075 (JNE120442_09650) yccS 1059764..1061926 (-) 2163 WP_000875041.1 YccS family putative transporter -
  QUE31_RS05080 (JNE120442_09660) yccF 1061936..1062382 (-) 447 WP_001261236.1 YccF domain-containing protein -
  QUE31_RS05085 (JNE120442_09670) helD 1062505..1064559 (+) 2055 WP_001317751.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=100355 QUE31_RS05070 WP_000839153.1 1059172..1059801(+) (sxy/tfoX) [Escherichia coli strain JNE120442]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=100355 QUE31_RS05070 WP_000839153.1 1059172..1059801(+) (sxy/tfoX) [Escherichia coli strain JNE120442]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment