Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   M744_RS04870 Genome accession   NZ_CP006471
Coordinates   946240..947403 (+) Length   387 a.a.
NCBI ID   WP_011378373.1    Uniprot ID   Q31KY9
Organism   Synechococcus elongatus UTEX 2973     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 941240..952403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M744_RS04855 (M744_05060) ppc 942633..945551 (+) 2919 Protein_956 phosphoenolpyruvate carboxylase -
  M744_RS14110 (M744_05065) - 945514..945855 (-) 342 WP_039755578.1 hypothetical protein -
  M744_RS04870 (M744_05075) recF 946240..947403 (+) 1164 WP_011378373.1 DNA replication/repair protein RecF Machinery gene
  M744_RS04875 (M744_05080) - 947635..947817 (-) 183 WP_039755580.1 hypothetical protein -
  M744_RS04880 (M744_05085) speD 947991..948416 (+) 426 WP_011378372.1 adenosylmethionine decarboxylase -
  M744_RS04885 (M744_05090) - 948751..949026 (+) 276 WP_011244160.1 HU family DNA-binding protein -
  M744_RS04890 (M744_05095) - 949126..949326 (-) 201 WP_039755581.1 hypothetical protein -
  M744_RS04895 (M744_05100) mutS 949520..952168 (-) 2649 WP_011378371.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 43910.05 Da        Isoelectric Point: 7.3543

>NTDB_id=100349 M744_RS04870 WP_011378373.1 946240..947403(+) (recF) [Synechococcus elongatus UTEX 2973]
MFLHSLHLQHFRNYRDQTVQFQAPKTILLGENAQGKTNLLEAVELFSTLRSHRVSRDRDLVQTGAESALLTAVVERDSGE
QQLQIQLQQQGRRRVQRDGEVLRRQLDLLGSLCSVQFSSLDLDLVRGGPQQRRDWLDRLLIQLQPIYAHLQQQYGRVLRQ
RNALLRRAESLDLALLAPLNWQLAQLGVHIMRRRSRAIQRLVPLAAHWHREISGQREQLIVAYQPSVLAPDDTDEAIAWQ
ERMLAQIEARRAAELGQRTSLVGPHRDDLNLSINGTEARLQASQGQQRTLVLSLKLAELELIEAVLGEPPLLLLDDVLAE
LDLRRQQQLLEAIANRFQTLITTTHLSAFDQSWVETAQILTVQSGHLQSEAVPMAPSSASLHKSLDS

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=100349 M744_RS04870 WP_011378373.1 946240..947403(+) (recF) [Synechococcus elongatus UTEX 2973]
ATGTTTTTGCATAGCCTTCACCTTCAACACTTTCGCAACTATCGCGATCAAACGGTGCAGTTCCAAGCTCCGAAGACAAT
CCTGCTCGGCGAAAACGCCCAGGGCAAAACCAATCTGCTGGAAGCCGTTGAACTGTTCTCAACCCTGCGATCGCATCGGG
TCAGTCGCGATCGCGATTTGGTTCAGACCGGAGCTGAGTCAGCGCTTCTAACAGCGGTTGTTGAGCGCGACAGCGGCGAG
CAACAGTTGCAAATTCAGCTTCAACAACAAGGTCGGCGGCGGGTTCAGCGAGATGGCGAAGTCCTACGGCGACAGCTTGA
TCTGCTGGGCTCGCTCTGCAGCGTTCAATTTTCCTCCCTTGACCTGGACTTGGTACGAGGGGGGCCCCAGCAACGCCGTG
ACTGGCTCGATCGCCTGCTGATTCAACTCCAGCCGATCTATGCCCATCTGCAACAGCAATACGGGCGCGTGTTGCGGCAG
CGCAATGCCCTGCTGAGGCGGGCAGAGTCTCTCGATCTGGCACTGCTGGCGCCACTCAACTGGCAACTAGCTCAGCTCGG
TGTCCACATCATGCGGCGGCGATCGCGAGCAATTCAACGCCTTGTGCCCTTGGCTGCCCACTGGCACAGGGAAATTAGTG
GTCAACGGGAGCAACTGATCGTGGCCTATCAGCCCAGTGTGCTGGCCCCCGACGACACCGATGAGGCGATCGCGTGGCAA
GAACGAATGCTGGCGCAGATCGAGGCTCGGCGGGCGGCGGAATTAGGTCAACGCACCAGTCTGGTTGGCCCCCATCGTGA
TGACCTCAATCTCAGCATCAACGGTACTGAAGCCCGGCTTCAAGCATCCCAAGGGCAGCAGCGCACCTTAGTGCTGTCGC
TCAAGTTGGCGGAGCTGGAGTTGATCGAAGCAGTATTGGGCGAGCCGCCCCTGCTGTTGCTGGATGATGTCTTAGCAGAA
CTGGACCTTCGGCGACAGCAACAATTACTAGAAGCGATCGCCAACCGTTTTCAGACGCTGATTACAACCACGCATCTTTC
GGCCTTTGACCAAAGCTGGGTGGAGACCGCTCAAATCCTTACGGTGCAGTCGGGTCATTTGCAGTCTGAAGCGGTGCCGA
TGGCCCCAAGCAGCGCGTCCCTGCATAAGTCCCTGGATAGTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31KY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

39.617

94.574

0.375

Multiple sequence alignment