Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EL310_RS12220 Genome accession   NZ_LR134522
Coordinates   2079743..2080711 (-) Length   322 a.a.
NCBI ID   WP_002247124.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC3372     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2074743..2085711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL310_RS12195 - 2076565..2076777 (-) 213 WP_003710665.1 hypothetical protein -
  EL310_RS12200 (NCTC3372_02063) - 2076872..2077210 (+) 339 WP_002214902.1 P-II family nitrogen regulator -
  EL310_RS12205 (NCTC3372_02064) - 2077266..2078024 (-) 759 WP_002247122.1 ABC transporter ATP-binding protein -
  EL310_RS12210 (NCTC3372_02065) - 2078108..2078734 (-) 627 WP_002247139.1 FmdE family protein -
  EL310_RS12215 (NCTC3372_02066) - 2078779..2079753 (-) 975 WP_002247110.1 iron chelate uptake ABC transporter family permease subunit -
  EL310_RS12220 (NCTC3372_02067) ceuB 2079743..2080711 (-) 969 WP_002247124.1 ABC transporter permease Machinery gene
  EL310_RS13210 - 2080746..2080964 (-) 219 WP_162009317.1 hypothetical protein -
  EL310_RS12225 (NCTC3372_02068) - 2080982..2081947 (-) 966 WP_002247108.1 siderophore ABC transporter substrate-binding protein -
  EL310_RS12230 (NCTC3372_02069) fetA 2082664..2084808 (-) 2145 WP_002247109.1 TonB-dependent siderophore receptor FetA/FrpB -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34411.71 Da        Isoelectric Point: 9.6850

>NTDB_id=1003473 EL310_RS12220 WP_002247124.1 2079743..2080711(-) (ceuB) [Neisseria meningitidis strain NCTC3372]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMMLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
ENEMLQMLGVWQQGDFSGVLLGRYELLWATGILALFAYLIADQLTILGLGETVSVNLGLNRTAILWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIISRLIGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1003473 EL310_RS12220 WP_002247124.1 2079743..2080711(-) (ceuB) [Neisseria meningitidis strain NCTC3372]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACTAACCTCCTGCTGCTGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTGGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCGGACAGCCAGCAGGTTATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGTAACCGTTTTGTC
GAGCCTTCTATGGCGGGCGCGGGTCAGAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGTTAATCGGGATGTTGGTGTTTATGATGCTTATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCTTTGGTCGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCCACCTTTATTGCGTAT
GAAAACGAAATGCTGCAAATGCTGGGCGTGTGGCAACAGGGCGATTTTTCCGGCGTGTTGCTCGGACGGTATGAACTGTT
GTGGGCAACGGGGATTTTGGCTTTGTTTGCCTATTTGATTGCCGACCAGCTGACGATTTTGGGTTTGGGCGAAACGGTAA
GCGTGAACTTGGGGCTGAACCGGACGGCGATTCTGTGGTCGGGGCTGATTATTGTGGCTTTGATTACGTCGCTGGTTATC
GTTACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATAGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTGGCTTTGCTGGGTGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGAGTGATTGTGTTTCCGT
TTGAAATTCCGGTATCGACCGTCTTCGGCGTATTGGGTACGGCGTTGTTTTTATGGCTTTTGTTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388