Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABHM42_RS22525 Genome accession   NZ_CP156941
Coordinates   4814988..4815623 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 2024CK-00455     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4809988..4820623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHM42_RS22495 (ABHM42_22495) murB 4811080..4812105 (-) 1026 WP_023434479.1 UDP-N-acetylmuramate dehydrogenase -
  ABHM42_RS22500 (ABHM42_22500) - 4812102..4812566 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  ABHM42_RS22505 (ABHM42_22505) kdsB 4812566..4813330 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABHM42_RS22510 (ABHM42_22510) - 4813330..4813515 (-) 186 WP_003091157.1 Trm112 family protein -
  ABHM42_RS22515 (ABHM42_22515) lpxK 4813553..4814551 (-) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  ABHM42_RS22520 (ABHM42_22520) - 4814551..4814991 (-) 441 WP_023125617.1 biopolymer transporter ExbD -
  ABHM42_RS22525 (ABHM42_22525) exbB 4814988..4815623 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABHM42_RS22530 (ABHM42_22530) comA 4815696..4817921 (-) 2226 WP_058201285.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABHM42_RS22535 (ABHM42_22535) - 4818052..4818585 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  ABHM42_RS22540 (ABHM42_22540) - 4818661..4819905 (-) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=1003409 ABHM42_RS22525 WP_003091163.1 4814988..4815623(-) (exbB) [Pseudomonas aeruginosa strain 2024CK-00455]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1003409 ABHM42_RS22525 WP_003091163.1 4814988..4815623(-) (exbB) [Pseudomonas aeruginosa strain 2024CK-00455]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCACCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment