Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABHM42_RS02045 Genome accession   NZ_CP156941
Coordinates   434335..435828 (-) Length   497 a.a.
NCBI ID   WP_058201325.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2024CK-00455     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429335..440828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHM42_RS02030 (ABHM42_02030) - 430065..430982 (+) 918 WP_023434403.1 LysR substrate-binding domain-containing protein -
  ABHM42_RS02035 (ABHM42_02035) pchP 431133..432182 (+) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  ABHM42_RS02040 (ABHM42_02040) betT 432225..434210 (-) 1986 WP_003096496.1 choline BCCT transporter BetT -
  ABHM42_RS02045 (ABHM42_02045) comM 434335..435828 (-) 1494 WP_058201325.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABHM42_RS02050 (ABHM42_02050) - 435869..436129 (-) 261 WP_003096478.1 accessory factor UbiK family protein -
  ABHM42_RS02055 (ABHM42_02055) glnK 436569..436907 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  ABHM42_RS02060 (ABHM42_02060) - 436947..438275 (+) 1329 WP_058201324.1 ammonium transporter -
  ABHM42_RS02065 (ABHM42_02065) - 438536..438961 (+) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABHM42_RS02070 (ABHM42_02070) sutA 439039..439356 (+) 318 WP_003096440.1 transcriptional regulator SutA -
  ABHM42_RS02075 (ABHM42_02075) - 439852..440766 (+) 915 WP_023107397.1 fimbrial protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53129.11 Da        Isoelectric Point: 7.9587

>NTDB_id=1003390 ABHM42_RS02045 WP_058201325.1 434335..435828(-) (comM) [Pseudomonas aeruginosa strain 2024CK-00455]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPSTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1003390 ABHM42_RS02045 WP_058201325.1 434335..435828(-) (comM) [Pseudomonas aeruginosa strain 2024CK-00455]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCATCTGGCCAA
TGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCAGCACCGCCCTCGACGGCCTGGAGTGCCT
TGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.74

100

0.567
  comM Haemophilus influenzae Rd KW20

55.644

100

0.565
  comM Vibrio cholerae strain A1552

56.338

100

0.563
  comM Glaesserella parasuis strain SC1401

54.98

100

0.555
  comM Legionella pneumophila str. Paris

49.703

100

0.505
  comM Legionella pneumophila strain ERS1305867

49.703

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.469

Multiple sequence alignment