Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M744_RS01445 Genome accession   NZ_CP006471
Coordinates   268348..268710 (-) Length   120 a.a.
NCBI ID   WP_011377525.1    Uniprot ID   Q31RI6
Organism   Synechococcus elongatus UTEX 2973     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 263348..273710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M744_RS01420 (M744_01485) - 264006..264296 (-) 291 WP_039755475.1 type II toxin-antitoxin system RelE/ParE family toxin -
  M744_RS01425 (M744_01490) - 264293..264523 (-) 231 WP_011377528.1 addiction module protein -
  M744_RS01430 (M744_01495) - 264858..265505 (-) 648 WP_011243520.1 Coq4 family protein -
  M744_RS01435 (M744_01500) - 265641..266729 (-) 1089 WP_011243521.1 potassium channel protein -
  M744_RS01440 (M744_01505) comA 266891..268330 (+) 1440 WP_011377526.1 phospholipase D-like domain-containing protein Machinery gene
  M744_RS01445 (M744_01510) ssb 268348..268710 (-) 363 WP_011377525.1 single-stranded DNA-binding protein Machinery gene
  M744_RS01450 (M744_01515) - 268939..269940 (+) 1002 WP_039755477.1 rod shape-determining protein -
  M744_RS01455 (M744_01520) mreC 269965..270714 (+) 750 WP_011243525.1 rod shape-determining protein MreC -
  M744_RS01460 (M744_01525) mreD 270675..271358 (+) 684 WP_011243526.1 rod shape-determining protein MreD -
  M744_RS01465 (M744_01530) ftsH3 271625..273466 (-) 1842 WP_011243527.1 ATP-dependent zinc metalloprotease FtsH3 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13556.21 Da        Isoelectric Point: 7.9768

>NTDB_id=100336 M744_RS01445 WP_011377525.1 268348..268710(-) (ssb) [Synechococcus elongatus UTEX 2973]
MSLNVVNLVGRVGRDPEARYFESGSVVCKFSLAVNRRSRNDEPDWFNVEMWGREAQVAIDYVKKGSLIGISGALKIESWT
DRNNNQRTTPVVRANRLELLGSRRDQEGGMAPRDPDSDLF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=100336 M744_RS01445 WP_011377525.1 268348..268710(-) (ssb) [Synechococcus elongatus UTEX 2973]
ATGAGCTTAAATGTTGTCAACTTGGTGGGGCGCGTCGGTCGTGACCCCGAAGCTCGTTACTTTGAGTCGGGTTCGGTCGT
TTGTAAGTTTTCCCTGGCGGTCAATCGCCGCAGCCGCAATGATGAGCCTGATTGGTTCAACGTTGAGATGTGGGGCCGCG
AAGCCCAGGTTGCGATCGACTATGTCAAGAAAGGCAGTCTGATCGGCATCAGTGGTGCTCTCAAGATTGAGAGCTGGACT
GATCGCAACAACAATCAGCGCACCACACCCGTCGTCCGGGCCAATCGTCTTGAGCTGCTGGGCTCGCGCCGAGATCAAGA
GGGCGGCATGGCTCCCCGCGATCCAGACAGCGATCTGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31RI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.375