Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QUF33_RS07390 Genome accession   NZ_AP027246
Coordinates   1379777..1380406 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain JNE120393     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1368699..1391591 1379777..1380406 within 0


Gene organization within MGE regions


Location: 1368699..1391591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF33_RS07330 (JNE120393_13920) - 1368699..1369718 (+) 1020 WP_001367167.1 tyrosine-type recombinase/integrase -
  QUF33_RS07335 (JNE120393_13930) yccA 1370126..1370785 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  QUF33_RS07340 (JNE120393_13940) tusE 1370876..1371205 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  QUF33_RS07345 (JNE120393_13950) yccX 1371202..1371480 (-) 279 WP_000048250.1 acylphosphatase -
  QUF33_RS07350 (JNE120393_13960) rlmI 1371575..1372765 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  QUF33_RS07355 (JNE120393_13970) hspQ 1372823..1373140 (+) 318 WP_001295356.1 heat shock protein HspQ -
  QUF33_RS07360 (JNE120393_13980) yccU 1373185..1373598 (-) 414 WP_000665217.1 CoA-binding protein -
  QUF33_RS07365 (JNE120393_13990) yccT 1373771..1374433 (+) 663 WP_000847791.1 DUF2057 family protein -
  QUF33_RS07370 (JNE120393_14000) mgsA 1374529..1374987 (+) 459 WP_000424181.1 methylglyoxal synthase -
  QUF33_RS07375 (JNE120393_14010) helD 1375019..1377073 (-) 2055 WP_001315388.1 DNA helicase IV -
  QUF33_RS07380 (JNE120393_14020) yccF 1377196..1377642 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QUF33_RS07385 (JNE120393_14030) yccS 1377652..1379814 (+) 2163 WP_000875044.1 YccS family putative transporter -
  QUF33_RS07390 (JNE120393_14040) sxy/tfoX 1379777..1380406 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QUF33_RS07395 (JNE120393_14050) sulA 1380625..1381134 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QUF33_RS07400 (JNE120393_14070) ompA 1381491..1382543 (+) 1053 WP_000750419.1 porin OmpA -
  QUF33_RS07405 (JNE120393_14080) matP 1382618..1383070 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QUF33_RS07410 (JNE120393_14090) ycbZ 1383256..1385016 (+) 1761 WP_000156526.1 Lon protease family protein -
  QUF33_RS07415 (JNE120393_14100) fabA 1385085..1385603 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  QUF33_RS07420 (JNE120393_14110) rmf 1385673..1385840 (-) 168 WP_000828648.1 ribosome modulation factor -
  QUF33_RS07425 (JNE120393_14120) pqiC 1386096..1386659 (-) 564 WP_000759129.1 membrane integrity-associated transporter subunit PqiC -
  QUF33_RS07430 (JNE120393_14130) pqiB 1386656..1388296 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  QUF33_RS07435 (JNE120393_14140) pqiA 1388301..1389554 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  QUF33_RS07440 (JNE120393_14150) uup 1389684..1391591 (-) 1908 WP_000053120.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=100334 QUF33_RS07390 WP_000839153.1 1379777..1380406(-) (sxy/tfoX) [Escherichia coli strain JNE120393]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=100334 QUF33_RS07390 WP_000839153.1 1379777..1380406(-) (sxy/tfoX) [Escherichia coli strain JNE120393]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment