Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABHM55_RS07480 Genome accession   NZ_CP156931
Coordinates   1602474..1603100 (+) Length   208 a.a.
NCBI ID   WP_045134652.1    Uniprot ID   -
Organism   Enterobacter kobei strain 2024CK-00368     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597474..1608100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHM55_RS07460 (ABHM55_07455) - 1597872..1599632 (-) 1761 WP_014883250.1 Lon protease family protein -
  ABHM55_RS07465 (ABHM55_07460) matP 1599819..1600271 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  ABHM55_RS07470 (ABHM55_07465) ompA 1600336..1601391 (-) 1056 WP_014883252.1 porin OmpA -
  ABHM55_RS07475 (ABHM55_07470) sulA 1601747..1602256 (-) 510 WP_014883253.1 SOS-induced cell division inhibitor SulA -
  ABHM55_RS07480 (ABHM55_07475) sxy/tfoX 1602474..1603100 (+) 627 WP_045134652.1 TfoX/Sxy family DNA transformation protein Regulator
  ABHM55_RS07485 (ABHM55_07480) yccS 1603057..1605219 (-) 2163 WP_252070479.1 YccS family putative transporter -
  ABHM55_RS07490 (ABHM55_07485) - 1605239..1605685 (-) 447 WP_252070480.1 YccF domain-containing protein -
  ABHM55_RS07495 (ABHM55_07490) helD 1605809..1607863 (+) 2055 WP_048996936.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23916.50 Da        Isoelectric Point: 9.0691

>NTDB_id=1003303 ABHM55_RS07480 WP_045134652.1 1602474..1603100(+) (sxy/tfoX) [Enterobacter kobei strain 2024CK-00368]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGTRRELTEWFNALPEPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1003303 ABHM55_RS07480 WP_045134652.1 1602474..1603100(+) (sxy/tfoX) [Enterobacter kobei strain 2024CK-00368]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCACT
GTTCGGTGGCTATACCCTGGCGGTAGATGACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCCTGTG
AAGAAAGCGCGAAATACTGTGTAAAAAATGCCGCCTCTTTTTTGACGCTGATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCCTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACCTTTCAGCTTGAGGTATTACTTT
TTGAAGCTGGCATTACTAACGAAGAGACGCTGCGGGCACTGGGTGCCAGGGAGTGCTGGTTAAAGATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTCGCCCTTGAGGGGGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAC
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.635

97.596

0.562

Multiple sequence alignment