Detailed information NTG1003283

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: EL264_RS01880
• Genome accession: NZ_LR134519
• Coordinates: 388970..390316 (+)
• Length: 448 a.a.
• NCBI ID: WP_164757116.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain NCTC12823
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 383970..395316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL264_RS01850 (NCTC12823_00375)	-	384032..384916 (+)	885	WP_164757115.1	beta-1,4-N-acetylgalactosamyltransferase	-
EL264_RS01855 (NCTC12823_00376)	-	384980..385531 (-)	552	WP_000846502.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
EL264_RS01860 (NCTC12823_00377)	-	385740..386138 (+)	399	WP_232111953.1	helix-turn-helix domain-containing protein	-
EL264_RS01865 (NCTC12823_00378)	-	386310..387473 (+)	1164	WP_000941691.1	NifS family cysteine desulfurase	-
EL264_RS01870 (NCTC12823_00379)	-	387495..388475 (+)	981	WP_001051994.1	iron-sulfur cluster assembly scaffold protein NifU	-
EL264_RS01875 (NCTC12823_00380)	-	388625..388858 (+)	234	WP_000415833.1	ribbon-helix-helix domain-containing protein	-
EL264_RS01880 (NCTC12823_00381)	radA	388970..390316 (+)	1347	WP_164757116.1	DNA repair protein RadA	Machinery gene
EL264_RS01885 (NCTC12823_00382)	msrB	390440..391519 (+)	1080	WP_126474082.1	peptide-methionine (R)-S-oxide reductase MsrB	-
EL264_RS01890 (NCTC12823_00383)	-	391808..392641 (-)	834	WP_126474083.1	sulfite exporter TauE/SafE family protein	-
EL264_RS01895 (NCTC12823_00384)	hopM	392855..394933 (-)	2079	WP_126474084.1	Hop family outer membrane protein HopM/HopN	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49469.42 Da
• Isoelectric Point: 8.0235

>NTDB_id=1003283 EL264_RS01880 WP_164757116.1 388970..390316(+) (radA) [Helicobacter pylori strain NCTC12823]
MAKKTSLFECQHCGFTSPKWLGKCVQCNSWESFIELNQTQKEVLNALKKPIPQAQKSVSIAAIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSTKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANAVGKIVEWM

Nucleotide

• Length: 1347 bp

>NTDB_id=1003283 EL264_RS01880 WP_164757116.1 388970..390316(+) (radA) [Helicobacter pylori strain NCTC12823]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGTGGTTTTACAAGCCCTAAGTGGCTAGGCAAGTGCGTTCAGTG
TAACTCATGGGAGAGTTTTATAGAATTGAACCAAACCCAAAAGGAAGTTTTAAACGCGCTTAAAAAACCGATCCCACAAG
CGCAAAAAAGCGTTTCTATCGCTGCAATTGAGCATGAAGAAGTCATCAAGTTTTCTTCCACTCAAAGCGAATTGGATATT
GTCTTAGGTGGGGGGATCGCTAAAGGGGGGTTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAAGCGAAT
ATTGAGAGCGAAAATTATTTTGCGTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAAATTTCTTCAGCGCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAACTCATGCGTTTGGCCAAAACAAGAGATATTGCTATTTTTATCATTG
GTCATATCACTAAAGAAGGGAGCATCGCAGGCCCTAGAGTGTTAGAGCATATGGTAGATAGCGTGCTGTATTTTGAAGGC
GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAGAT
GAAAGAGCAGGGTTTGGTGAGCACTAAAGAAGCTTCAAGCTTGTTTTTTTCTAAAGAAGAGCCTATGGAGGGGAGCGCGA
TTACCATCACTTTAGAAGGCTCAAGGGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAGTGCAGTTTTGGAGCACCC
AAACGATTAGCGAACGGGTTTGACACCAACCGCCTTAACATGCTCATCGCTTTATTAGAAAAAAAGCTAGAAATCCCTTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGCATTAAAATTAGCGAGCCGGCTTGCGATTTAGCGGTGATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCCAATTTGAACGCTAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCTAAAAAACC
CAGCCAAAAAACCTCTATCAAATGCTATGAAGCCAATGCGGTAGGCAAGATTGTTGAATGGATGTGA

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (344-426)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (66-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae R6	46.948	95.089	0.446
radA	Streptococcus pneumoniae Rx1	46.948	95.089	0.446
radA	Streptococcus pneumoniae D39	46.948	95.089	0.446
radA	Streptococcus pneumoniae TIGR4	46.948	95.089	0.446
radA	Streptococcus mitis SK321	46.948	95.089	0.446
radA/sms	Bacillus subtilis subsp. subtilis str. 168	46.838	95.313	0.446
radA	Streptococcus mitis NCTC 12261	46.714	95.089	0.444