Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   EL256_RS06620 Genome accession   NZ_LR134517
Coordinates   1376711..1377760 (+) Length   349 a.a.
NCBI ID   WP_126443425.1    Uniprot ID   -
Organism   Helicobacter pylori strain NCTC13345     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1371711..1382760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL256_RS06605 (NCTC13345_01298) - 1372599..1373861 (-) 1263 WP_126443421.1 DUF874 family protein -
  EL256_RS06610 (NCTC13345_01299) asd 1374294..1375334 (-) 1041 WP_126443423.1 aspartate-semialdehyde dehydrogenase -
  EL256_RS06615 (NCTC13345_01300) hisS 1375321..1376649 (-) 1329 WP_120907514.1 histidine--tRNA ligase -
  EL256_RS06620 (NCTC13345_01301) waaF 1376711..1377760 (+) 1050 WP_126443425.1 lipopolysaccharide heptosyltransferase II Regulator
  EL256_RS06625 (NCTC13345_01302) - 1377950..1378438 (-) 489 WP_000744157.1 hypothetical protein -
  EL256_RS06635 (NCTC13345_01303) fusA 1378997..1381075 (-) 2079 WP_126443427.1 elongation factor G -
  EL256_RS06640 (NCTC13345_01304) rpsG 1381087..1381554 (-) 468 WP_001254349.1 30S ribosomal protein S7 -
  EL256_RS06645 (NCTC13345_01305) rpsL 1381570..1381977 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39519.18 Da        Isoelectric Point: 9.4628

>NTDB_id=1003266 EL256_RS06620 WP_126443425.1 1376711..1377760(+) (waaF) [Helicobacter pylori strain NCTC13345]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKRDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPIRIGFAQFFRSFFLSHAITAAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFDLPTHTPNTPKKIGFNPSASYGSAKRWLASYYAEVAAALLEKGHEIYFFGAKEDTIVSEEILKLTKSLLKNPLLSH
NAYDLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKDGKNHLCMRSITPLEVLQAAHALLEEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1003266 EL256_RS06620 WP_126443425.1 1376711..1377760(+) (waaF) [Helicobacter pylori strain NCTC13345]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAATGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAGAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAGCTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTTTTCCTAAGCCATGCGATAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTGATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCTAGCTTCTTATTACGCCGAAGTTGCGGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCACCAAAAGCTTGTTAAAAAACCCCTTATTATCCCAC
AACGCTTACGATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCCATGCATGTAGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTGCACCATGCAAGAAACGAGTTTGCCCT
TTAAAGGATGGAAAAAACCATTTGTGCATGCGATCTATCACACCCCTTGAAGTCCTTCAAGCCGCTCACGCTCTTTTAGA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.971

98.854

0.375