Detailed information NTG1003244

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: EL256_RS01905
• Genome accession: NZ_LR134517
• Coordinates: 393832..395178 (+)
• Length: 448 a.a.
• NCBI ID: WP_126442488.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain NCTC13345
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 388832..400178

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL256_RS01870 (NCTC13345_00376)	-	388916..389767 (+)	852	WP_164758895.1	beta-1,4-N-acetylgalactosamyltransferase	-
EL256_RS01875 (NCTC13345_00377)	-	389835..390465 (-)	631	Protein_357	YbhB/YbcL family Raf kinase inhibitor-like protein	-
EL256_RS01880 (NCTC13345_00378)	-	390531..390992 (+)	462	WP_126442486.1	helix-turn-helix domain-containing protein	-
EL256_RS01890 (NCTC13345_00379)	-	391161..392324 (+)	1164	WP_000941655.1	NifS family cysteine desulfurase	-
EL256_RS01895 (NCTC13345_00380)	-	392346..393326 (+)	981	WP_001947104.1	iron-sulfur cluster assembly scaffold protein NifU	-
EL256_RS01900 (NCTC13345_00381)	-	393486..393719 (+)	234	WP_126442487.1	ribbon-helix-helix domain-containing protein	-
EL256_RS01905 (NCTC13345_00382)	radA/sms	393832..395178 (+)	1347	WP_126442488.1	DNA repair protein RadA	Machinery gene
EL256_RS01910 (NCTC13345_00383)	msrB	395299..396378 (+)	1080	WP_000866628.1	peptide-methionine (R)-S-oxide reductase MsrB	-
EL256_RS01915 (NCTC13345_00384)	-	396768..397601 (-)	834	WP_000392976.1	sulfite exporter TauE/SafE family protein	-
EL256_RS01920 (NCTC13345_00385)	hopM	397813..399894 (-)	2082	WP_269471705.1	Hop family outer membrane protein HopM/HopN	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49495.46 Da
• Isoelectric Point: 7.8019

>NTDB_id=1003244 EL256_RS01905 WP_126442488.1 393832..395178(+) (radA/sms) [Helicobacter pylori strain NCTC13345]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVLNALKKPLPQAQKSVSIAEIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDVAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANVVGKIVEWM

Nucleotide

• Length: 1347 bp

>NTDB_id=1003244 EL256_RS01905 WP_126442488.1 393832..395178(+) (radA/sms) [Helicobacter pylori strain NCTC13345]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAATGGCTAGGAAAGTGCGTTCAGTG
CAACGCATGGGAGAGCTTTATAGAATTGAACCAAACCCAAAAGGAAGTTTTAAACGCGCTTAAAAAACCGCTCCCACAAG
CGCAAAAAAGCGTTTCTATCGCTGAAATTGAGCATGAAGAAGTCATCAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT
GTCTTAGGTGGGGGGATCGCTAAAGGGGGGTTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTGGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTAGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCTAAT
ATAGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCTATCCAAACGCTTTATTCGCCAGAGATTTCTTCAGCCCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTGGCAAAAACAAGAGATGTTGCTATTTTTATCATCG
GTCATATCACTAAAGAAGGGAGCATCGCAGGGCCTAGAGTGCTAGAGCATATGGTAGATAGCGTGCTGTATTTTGAGGGT
GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAAAT
GAAAGAGCAGGGTTTGGTGAGCGCTAAAGAGGCTTCAAGCTTGTTTTTTTCAAAAGAAGAGCCTATGGAGGGGAGCGCGA
TTACCATCACTTTAGAAGGATCAAGGGCGTTGATTTTAGAAATTCAGGCGTTGGTGAGCGAGTGCAGTTTCGGGGCGCCC
AAACGATTAGCGAACGGGTTTGACACTAACCGCCTTAACATGCTCATCGCTTTATTGGAAAAAAAACTAGAAATCCCTTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGCATCAAAATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCTAGGTTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCCAAAAAACC
CAGTCAAAAAACCTCTATCAAATGCTATGAGGCCAATGTGGTGGGTAAGATTGTTGAGTGGATGTGA

Domains

Predicted by InterProScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (62-220)

• Subunit ChlI of Mg-chelatase (ChlI) (344-426)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	46.838	95.313	0.446
radA	Streptococcus pneumoniae Rx1	46.714	95.089	0.444
radA	Streptococcus pneumoniae D39	46.714	95.089	0.444
radA	Streptococcus pneumoniae R6	46.714	95.089	0.444
radA	Streptococcus pneumoniae TIGR4	46.714	95.089	0.444
radA	Streptococcus mitis SK321	46.714	95.089	0.444
radA	Streptococcus mitis NCTC 12261	46.479	95.089	0.442