Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABE785_RS07720 Genome accession   NZ_CP156920
Coordinates   1566745..1568550 (-) Length   601 a.a.
NCBI ID   WP_039107537.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain PYN10-6-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1561745..1573550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE785_RS07695 (ABE785_07695) - 1562355..1563254 (-) 900 WP_039107531.1 RluA family pseudouridine synthase -
  ABE785_RS07700 (ABE785_07700) - 1563251..1564054 (-) 804 WP_039107533.1 NAD kinase -
  ABE785_RS07705 (ABE785_07705) - 1564056..1564715 (-) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  ABE785_RS07710 (ABE785_07710) - 1565029..1565667 (+) 639 WP_039107535.1 ClpXP adapter SpxH family protein -
  ABE785_RS07715 (ABE785_07715) - 1565828..1566691 (+) 864 WP_011668200.1 DegV family protein -
  ABE785_RS07720 (ABE785_07720) pepF 1566745..1568550 (-) 1806 WP_039107537.1 oligoendopeptidase F Regulator
  ABE785_RS07725 (ABE785_07725) - 1568617..1569711 (-) 1095 WP_039107538.1 competence protein CoiA family protein -
  ABE785_RS07730 (ABE785_07730) trmB 1569838..1570485 (-) 648 WP_039107541.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ABE785_RS07735 (ABE785_07735) - 1570551..1571342 (-) 792 WP_041815397.1 phosphotransferase family protein -
  ABE785_RS07740 (ABE785_07740) - 1571404..1572630 (-) 1227 WP_039107542.1 ABC transporter permease -
  ABE785_RS07745 (ABE785_07745) - 1572627..1573361 (-) 735 WP_039107544.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67191.20 Da        Isoelectric Point: 4.7831

>NTDB_id=1003217 ABE785_RS07720 WP_039107537.1 1566745..1568550(-) (pepF) [Levilactobacillus brevis strain PYN10-6-2]
MKQIPKRSEVPTALTWDLTTIFPDEAAFKTAIAAIKAQTTVVAGLKGQLAQSGAALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNDPRLADYQHVFDVLGQQRAHTLSVAEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNEHLDSLHRYVNLRKEILALPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLVYLKAGSSA
LPLDVMKQAGVDMTQPDYLQTAFATFDERLAEFTQLAHELN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1003217 ABE785_RS07720 WP_039107537.1 1566745..1568550(-) (pepF) [Levilactobacillus brevis strain PYN10-6-2]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCACGGCACTGACTTGGGACCTGACAACTATTTTTCCCGACGAAGCAGC
TTTTAAGACCGCAATTGCCGCGATTAAAGCGCAAACAACGGTTGTGGCCGGCTTGAAGGGACAATTGGCCCAAAGTGGGG
CCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCGGCCCAAGCATTAATGGGGCAGGCCGAGAGCTTGGTGGCAACTGTGGGTGCCGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCCTTGTCAGCGGATCAGCTGCAAACGCTGATTGATAACGACCCCCGGCTGG
CAGATTATCAGCATGTGTTTGACGTATTGGGCCAGCAACGGGCACATACGCTGTCAGTGGCGGAGGAAAAATTGTTAGCG
GGGGCTAGTGATATCTTTGGTGCATCTGCTAAAACTTATAGTGTGCTGAGTGATGCTGATCTAAAGTTTCCGGTTGTTCA
AGACGAGGCCGGCAACGATGTGCGACTGTCAGAAGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCCTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCTGCAACCTTGGCGAGTGAAGTCAAA
ACGCATAATTTTAGCGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCCGCAATGAGTCGCAACAATGTGCCAGCAGT
GGTCTATGATACCTTGGTGGAAACAGTCAATGAGCATTTAGACTCGCTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGCCTTGCCGCAACTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTTTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGTCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAGCGAACGGGCGCTTACTCAGGCGGGATGTATGATACCAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTATCTGTTGAAAACCCAGACTGATCCCAAGGTGCGAGCTTACGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAGACGCAGTTTGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACA
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGCGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCCACGA
CGTTATCGCAACGAATTTTGAGTGGTGACGAGGCAAAGCGGGATGCTTACTTGGTCTATCTAAAGGCGGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGACTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGCTTGGCAGAATTCACGCAATTGGCGCATGAATTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-183)

Peptidase family M3 (Peptidase_M3)

(204-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.169

98.17

0.493

Multiple sequence alignment