Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   EL265_RS05665 Genome accession   NZ_LR134515
Coordinates   1229394..1231592 (-) Length   732 a.a.
NCBI ID   WP_005601482.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain NCTC10976     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224394..1236592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL265_RS05645 (NCTC10976_01140) - 1225500..1226270 (-) 771 WP_005601479.1 glycosyltransferase family 25 protein -
  EL265_RS05650 (NCTC10976_01141) - 1226267..1227475 (-) 1209 WP_005597816.1 lipopolysaccharide biosynthesis protein -
  EL265_RS05655 (NCTC10976_01142) - 1227453..1228418 (-) 966 WP_005601480.1 polysaccharide pyruvyl transferase family protein -
  EL265_RS05660 (NCTC10976_01143) - 1228574..1229314 (+) 741 WP_005601481.1 YdcF family protein -
  EL265_RS05665 (NCTC10976_01144) priA 1229394..1231592 (-) 2199 WP_005601482.1 primosomal protein N' Machinery gene
  EL265_RS05670 (NCTC10976_01145) - 1231695..1232852 (-) 1158 WP_005601483.1 chorismate mutase -
  EL265_RS05675 (NCTC10976_01146) prlC 1232975..1235008 (-) 2034 WP_005601491.1 oligopeptidase A -
  EL265_RS05680 (NCTC10976_01147) pflA 1235151..1235888 (-) 738 WP_005597829.1 pyruvate formate lyase 1-activating protein -

Sequence

Protein


Download         Length: 732 a.a.        Molecular weight: 82550.19 Da        Isoelectric Point: 8.8719

>NTDB_id=1003204 EL265_RS05665 WP_005601482.1 1229394..1231592(-) (priA) [Actinobacillus pleuropneumoniae strain NCTC10976]
MALPVPLHRYFDYLLPSFLSAVKGVRVEVPFGNQTKIGIVVDFPETSDVPEDKLKPIKAVLDLEPIFDKEIWTLLRWAAR
YYHAPIGEVAINALPVKLRNGDSTERSQPDYFAVTEAGRAALLSGENKRAKKQQDLLAKLAEIANFFEKPAACSQSAWKG
LLEKNYIELVNVPFEPQHWQKKLQNRPLVNLQNRLVLNKQQSLVVSRLTVQNGFEAFLLNGVTGSGKTEVYLQVIEEVLK
RGEQVLVLVPEIGLTPQTVQRFKARFNVEIDVLHSNMNETERLNAWLRVKNGESAIVIGTRSALFSQFEKLGLIIIDEEH
DSSFKQQDGWRYHARDLAILRAKNLHIPIILGSATPSLESVQNVQNGKFIELSLTARAGNAQQAKQQLIDLKTQRITAGL
SDRLLAMMKRHLEQGNQVVLFLNRRGFAPVLLCHECGWMCECDACEKPYTYHQKQKILRCHHCASQRVIPRQCGHCGSTN
LITTGVGTEQLEQVLSEQFPTYQISRIDRDSTARKGALENHLNDIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSAL
FSTDFRAEERLAQLYVQVAGRAGRAEKQGEVVLQTHYPEHPLLKTLLEQGYLAFAQEALKMRKVMGLPPFAAQVLLRATG
KDNQQVVNLLQNLTAYFQQKCTELGLQDIQLLPPFSAPMAKKAGHYRWLLLIQHRSRGVLQQLIDQFDLDKANLGLQNNI
RLTLDIDPQEIG

Nucleotide


Download         Length: 2199 bp        

>NTDB_id=1003204 EL265_RS05665 WP_005601482.1 1229394..1231592(-) (priA) [Actinobacillus pleuropneumoniae strain NCTC10976]
GTGGCATTACCCGTGCCGTTACATCGTTATTTTGATTATTTACTGCCGTCGTTTTTGTCGGCAGTCAAAGGTGTGCGTGT
TGAAGTGCCTTTCGGTAATCAAACGAAAATCGGGATTGTAGTGGATTTTCCCGAAACGAGCGATGTGCCTGAAGATAAGC
TCAAACCGATTAAAGCGGTATTAGATTTAGAACCGATCTTTGACAAGGAAATTTGGACACTACTTCGTTGGGCGGCTCGT
TATTATCATGCTCCTATCGGTGAAGTGGCGATCAATGCTTTGCCGGTGAAATTACGTAACGGCGATAGCACCGAAAGATC
GCAACCGGATTACTTTGCGGTTACTGAGGCAGGGCGAGCAGCATTGCTCTCGGGTGAGAACAAGCGGGCCAAAAAACAGC
AAGATTTACTGGCGAAACTGGCAGAAATTGCAAATTTTTTTGAAAAACCGGCCGCTTGTAGCCAATCGGCTTGGAAAGGG
CTATTGGAAAAAAACTATATCGAACTGGTTAATGTGCCGTTTGAACCGCAACATTGGCAAAAAAAATTGCAAAATCGACC
GCTTGTAAATTTGCAGAATCGACTGGTATTAAATAAACAGCAAAGCTTAGTGGTGAGCCGCTTAACAGTACAGAACGGTT
TCGAAGCTTTTTTATTAAATGGCGTAACCGGTTCAGGCAAAACCGAAGTATATTTGCAAGTGATCGAAGAGGTGTTAAAG
CGAGGCGAGCAAGTATTGGTGTTAGTGCCGGAAATCGGGCTGACCCCGCAAACGGTGCAACGTTTTAAAGCCCGTTTTAA
TGTTGAAATTGATGTTCTTCATTCGAATATGAATGAAACAGAGCGATTAAATGCTTGGTTGCGAGTAAAAAACGGCGAAA
GTGCGATTGTGATCGGCACGCGTTCGGCATTGTTCAGCCAGTTTGAGAAATTGGGCTTAATCATTATTGATGAAGAACAC
GATAGTTCTTTCAAACAACAAGACGGCTGGCGTTATCACGCAAGAGATTTGGCGATTTTACGGGCGAAAAATTTACATAT
CCCGATTATTTTGGGTTCTGCAACGCCAAGTTTGGAAAGCGTACAAAACGTTCAAAACGGTAAGTTTATTGAGCTATCTT
TAACCGCTCGTGCCGGTAATGCTCAACAGGCGAAACAGCAATTGATTGATTTAAAAACACAGCGTATTACCGCCGGACTT
TCCGACCGCTTATTAGCGATGATGAAACGGCATTTGGAGCAAGGTAATCAGGTGGTGTTGTTTTTAAATCGCCGTGGCTT
TGCACCGGTTTTACTTTGTCACGAGTGTGGCTGGATGTGTGAATGTGACGCTTGTGAAAAGCCTTACACTTATCATCAGA
AACAGAAAATCTTGCGTTGTCATCATTGTGCTTCACAGCGAGTGATCCCTCGCCAGTGCGGGCATTGCGGCTCAACCAAT
CTGATTACGACCGGAGTGGGGACGGAGCAGTTGGAGCAAGTGTTAAGTGAGCAATTCCCAACTTACCAAATTAGCCGTAT
CGACCGAGATTCCACCGCTCGTAAAGGGGCATTGGAAAATCACTTAAATGATATCCGAGAAGGTAAAAGCCAAATCCTTA
TCGGCACGCAAATGTTAGCGAAAGGGCATCATTTTCCGAATGTAACGTTAGTGGCGATTGTGAATGTAGATTCGGCACTG
TTTTCGACCGACTTCCGTGCGGAAGAACGTTTGGCACAGCTTTATGTGCAAGTGGCGGGACGTGCCGGACGAGCGGAAAA
GCAGGGCGAAGTGGTATTACAAACTCATTATCCGGAACATCCGTTGCTCAAGACTTTGTTAGAACAAGGTTATTTGGCGT
TTGCACAAGAAGCGTTAAAAATGCGTAAAGTGATGGGCTTGCCGCCGTTTGCTGCGCAAGTGTTGTTACGGGCAACCGGC
AAAGATAATCAGCAAGTGGTAAATCTTTTGCAAAATTTGACCGCTTATTTTCAGCAAAAATGTACGGAACTCGGTTTGCA
GGATATCCAGCTTCTACCGCCTTTTTCCGCACCGATGGCTAAAAAAGCGGGGCATTACCGCTGGCTTTTATTAATTCAAC
ATCGCTCAAGAGGCGTATTACAACAGTTGATCGATCAATTTGATTTGGATAAAGCCAATTTAGGCTTACAAAATAATATT
CGTTTAACCTTAGATATTGATCCGCAAGAAATCGGCTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(215-363)

Primosomal protein N C-terminal domain (PriA_C)

(629-728)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(442-467)

3DNA-binding domain (3BD) (PriA_3primeBD)

(2-95)

Helicase conserved C-terminal domain (Helicase_C)

(491-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

42.992

100

0.436