Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   EL254_RS06665 Genome accession   NZ_LR134512
Coordinates   1276956..1277396 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain NCTC13949     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271956..1282396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL254_RS06650 (NCTC13949_01327) - 1272614..1273240 (-) 627 WP_000449636.1 GTP pyrophosphokinase family protein -
  EL254_RS06655 (NCTC13949_01328) rcrQ 1273348..1275102 (-) 1755 WP_000851083.1 ABC transporter ATP-binding protein Regulator
  EL254_RS06660 (NCTC13949_01329) rcrP 1275092..1276909 (-) 1818 WP_017285320.1 ABC transporter ATP-binding protein Regulator
  EL254_RS06665 (NCTC13949_01330) rcrR 1276956..1277396 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  EL254_RS06670 (NCTC13949_01331) - 1277615..1279687 (+) 2073 WP_120033160.1 surface-anchored 5'-nucleotidase -
  EL254_RS06675 (NCTC13949_01332) - 1279724..1280134 (-) 411 WP_120033163.1 peptide deformylase -
  EL254_RS06680 (NCTC13949_01333) gdhA 1280204..1281553 (-) 1350 WP_000200446.1 NADP-specific glutamate dehydrogenase -
  EL254_RS06685 (NCTC13949_01334) - 1281721..1282230 (+) 510 WP_000870955.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=1003141 EL254_RS06665 WP_000431168.1 1276956..1277396(-) (rcrR) [Streptococcus agalactiae strain NCTC13949]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1003141 EL254_RS06665 WP_000431168.1 1276956..1277396(-) (rcrR) [Streptococcus agalactiae strain NCTC13949]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATCTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411