Detailed information NTG1003072

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AAGD24_RS05025
• Genome accession: NZ_CP156894
• Coordinates: 1111154..1112542 (-)
• Length: 462 a.a.
• NCBI ID: WP_075195691.1
• Uniprot ID: A0A1W6KD95
• Organism: Marinobacter sp. M5B strain M5B10.3.1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1106154..1117542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAGD24_RS05000	-	1107682..1108197 (-)	516	WP_075195687.1	PilX N-terminal domain-containing pilus assembly protein	-
AAGD24_RS05005	-	1108197..1109324 (-)	1128	WP_075195688.1	PilW family protein	-
AAGD24_RS05010	pilV	1109327..1109809 (-)	483	WP_178380785.1	type IV pilus modification protein PilV	-
AAGD24_RS05015	-	1109818..1110303 (-)	486	WP_083637211.1	GspH/FimT family pseudopilin	-
AAGD24_RS05020	-	1110460..1111032 (-)	573	WP_169052462.1	GspH/FimT family pseudopilin	-
AAGD24_RS05025	pilR	1111154..1112542 (-)	1389	WP_075195691.1	sigma-54 dependent transcriptional regulator	Regulator
AAGD24_RS05030	-	1112596..1114242 (-)	1647	WP_075195692.1	PAS domain-containing sensor histidine kinase	-
AAGD24_RS05035	-	1114328..1115980 (+)	1653	WP_075195693.1	NAD+ synthase	-
AAGD24_RS05040	-	1116025..1116861 (-)	837	WP_041336829.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 50879.96 Da
• Isoelectric Point: 4.7542

>NTDB_id=1003072 AAGD24_RS05025 WP_075195691.1 1111154..1112542(-) (pilR) [Marinobacter sp. M5B strain M5B10.3.1]
MTTHTALIVDDEPDIRDLLEITLSRMGITTLTAPDITCAKKLLGEHKPQLCLTDMNLPDGNGIELVQWIQQNTPCTPVAV
ITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALRLSEAEANTQDTDDEPGLLLGKSTEIQKLRSQTRKLARSQA
PVFISGESGSGKELVARMIHLQGPRRDGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPDLVQEGIFRQDLFYRINVIELAVPPLRERPDDISLLA
RHILERIGKEYECEPASLTQGAIGRLKQYDFPGNVRELENVLERAFTLCDADQIDAGDLHLGNGVQTASSPTQVIAEGEA
NDDETAPVPDGEIDLENYLENIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=1003072 AAGD24_RS05025 WP_075195691.1 1111154..1112542(-) (pilR) [Marinobacter sp. M5B strain M5B10.3.1]
ATGACCACTCATACCGCCCTGATCGTAGACGACGAACCCGATATCCGGGACCTTCTGGAAATCACACTCAGCCGTATGGG
AATAACAACCCTGACCGCGCCAGACATCACCTGCGCGAAGAAGCTTCTGGGTGAACACAAACCACAACTCTGCCTGACAG
ACATGAACCTGCCCGATGGCAACGGCATCGAGCTTGTGCAGTGGATACAGCAGAATACGCCCTGTACCCCTGTGGCTGTA
ATCACGGCCTACGGCAACATGGATACGGCCATTGAATCCCTGAAGGCCGGTGCCTTCGATTTTGTGTCCAAGCCGGTTGA
GCTTCCGCGGCTTCGGGAGTTGGTCAACAGTGCTCTCCGGTTGTCGGAGGCCGAAGCCAACACTCAGGACACTGACGATG
AACCGGGTCTGTTACTCGGCAAATCAACAGAAATTCAAAAACTCCGAAGCCAAACTCGGAAACTGGCCAGAAGCCAAGCA
CCCGTTTTCATCAGCGGGGAATCGGGTAGCGGTAAAGAACTGGTCGCAAGAATGATTCATTTGCAGGGTCCTCGCCGCGA
CGGTCCCTTTATAGCTGTCAACTGTGGAGCCATCCCCTCTGAACTGATGGAGAGTGAATTTTTTGGGCACAAAAAGGGCA
GCTTTACCGGGGCCGTTGAAAACAAAGACGGCCTGTTTCGATCTGCCAACGGTGGCACTTTGTTTCTGGACGAAGTTGCT
GACCTGCCTCTGGCAATGCAGGTAAAACTCCTGAGGGCAATTCAGGAAAAGGCTGTCCGCCCGGTTGGCGATACCAAGGA
AGTTCCGGTGGATATCCGGGTACTCAGCGCGACCCATAAGAACCTTCCAGATCTGGTTCAGGAAGGCATTTTTCGGCAAG
ACCTTTTCTACCGGATCAACGTCATTGAACTGGCTGTGCCTCCTTTGCGGGAACGACCAGACGACATTTCCTTGCTTGCT
CGCCACATTCTCGAAAGAATCGGTAAAGAATATGAATGCGAACCCGCCTCGCTAACCCAGGGCGCCATCGGGCGGCTCAA
ACAGTACGATTTCCCGGGCAACGTAAGGGAACTCGAAAATGTTCTGGAGCGCGCCTTTACGCTTTGCGATGCCGATCAAA
TTGATGCCGGCGATCTGCACCTGGGAAATGGTGTACAGACGGCGTCGTCCCCCACCCAGGTTATCGCGGAAGGCGAGGCC
AACGATGACGAGACTGCCCCGGTGCCCGATGGCGAGATTGACCTGGAAAACTACCTGGAGAACATAGAGAGACAAGCCAT
CGAGAAGGCTCTGGAAGCCACCCGATGGAATAAAACGGCGGCCGCTAAGCGTCTGGGAATCAGCTTTCGAGCGCTTCGGT
ACCGCCTCAAGAAGCTGGGAATGGAGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

3D structure

• AlphaFold DB: A0A1W6KD95

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.987	100	0.63
pilR	Acinetobacter baumannii strain A118	53.913	99.567	0.537