Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EL243_RS05955 Genome accession   NZ_LR134511
Coordinates   1135256..1136122 (-) Length   288 a.a.
NCBI ID   WP_002864556.1    Uniprot ID   Q0P950
Organism   Campylobacter jejuni subsp. jejuni strain NCTC10983     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1130256..1141122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL243_RS05935 (NCTC10983_01196) metF 1132109..1132957 (+) 849 WP_002858469.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  EL243_RS05940 - 1132979..1133170 (-) 192 WP_002852856.1 membrane protein -
  EL243_RS05945 (NCTC10983_01197) atpB 1133167..1133847 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  EL243_RS05950 (NCTC10983_01198) radA 1133916..1135256 (-) 1341 WP_002858434.1 DNA repair protein RadA Machinery gene
  EL243_RS05955 (NCTC10983_01199) pilA 1135256..1136122 (-) 867 WP_002864556.1 signal recognition particle-docking protein FtsY Machinery gene
  EL243_RS05960 (NCTC10983_01200) - 1136122..1136679 (-) 558 WP_002858112.1 TlpA disulfide reductase family protein -
  EL243_RS05965 - 1136762..1137388 (+) 627 WP_002875342.1 5-formyltetrahydrofolate cyclo-ligase -
  EL243_RS05970 (NCTC10983_01201) rny 1137309..1138862 (+) 1554 WP_002858133.1 ribonuclease Y -
  EL243_RS05975 (NCTC10983_01202) - 1138871..1139428 (+) 558 WP_002856055.1 DedA family protein -
  EL243_RS05980 (NCTC10983_01203) - 1139428..1140687 (+) 1260 WP_002873165.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32052.03 Da        Isoelectric Point: 5.5179

>NTDB_id=1003053 EL243_RS05955 WP_002864556.1 1135256..1136122(-) (pilA) [Campylobacter jejuni subsp. jejuni strain NCTC10983]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVTFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1003053 EL243_RS05955 WP_002864556.1 1135256..1136122(-) (pilA) [Campylobacter jejuni subsp. jejuni strain NCTC10983]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTACTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P950

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437