Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABEF79_RS14840 Genome accession   NZ_CP156810
Coordinates   2991478..2992632 (+) Length   384 a.a.
NCBI ID   WP_347460801.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7454     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2986478..2997632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF79_RS14825 (ABEF79_14825) - 2988209..2990245 (-) 2037 WP_347460800.1 TonB-dependent copper receptor -
  ABEF79_RS14830 (ABEF79_14830) - 2990318..2990734 (-) 417 WP_347453431.1 DUF2946 family protein -
  ABEF79_RS14835 (ABEF79_14835) def 2990826..2991356 (-) 531 WP_034582549.1 peptide deformylase -
  ABEF79_RS14840 (ABEF79_14840) tsaP 2991478..2992632 (+) 1155 WP_347460801.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABEF79_RS14845 (ABEF79_14845) dprA 2992729..2993868 (+) 1140 WP_347460802.1 DNA-processing protein DprA Machinery gene
  ABEF79_RS14850 (ABEF79_14850) - 2993910..2994485 (+) 576 WP_347460803.1 Sua5/YciO/YrdC/YwlC family protein -
  ABEF79_RS14855 (ABEF79_14855) - 2994925..2995824 (-) 900 WP_347460804.1 DMT family transporter -
  ABEF79_RS14860 (ABEF79_14860) - 2996042..2996587 (+) 546 WP_347460805.1 glutathione peroxidase -
  ABEF79_RS14865 (ABEF79_14865) - 2996799..2997158 (+) 360 WP_347453426.1 RcnB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42116.22 Da        Isoelectric Point: 8.8397

>NTDB_id=1003028 ABEF79_RS14840 WP_347460801.1 2991478..2992632(+) (tsaP) [Acinetobacter sp. ANC 7454]
MKKVLKGMPSFSALGFKNQMLALAVCVGVSMGTISTADAAIARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCTGIINRYLGTDKLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTVLPADSVEGTPYILGTADQRVLAGKGQKVYARGNGLQVGQRYAVYREAEPYVFTDANGKKYTVALELQQVASGIAVR
SEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENVTNGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQSGH
VFSVNQQGEIVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLDSELPIKVGASIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1003028 ABEF79_RS14840 WP_347460801.1 2991478..2992632(+) (tsaP) [Acinetobacter sp. ANC 7454]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTCGCACTCGCCGTGTGTGT
GGGTGTCAGTATGGGGACTATTTCAACCGCAGACGCAGCAATCGCGCGTAATGTGAACCCACCGAGCCTGAAGGCCTCTG
CACCGAACGTGTATGTGGTGAAAAAAGGTGACACATTATGGGATATTTCCAAACGTTTCCTAAAGAATCCGGTGCGCTGG
CCAGAGATCTGGGCCGGCAATAAACATGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTGTTGATGTGTGACTA
TCAGGGTCGCCCAATCATTGGTAAAGATGAAGGTGATGGCTGTACCGGGATTATCAACCGTTACCTCGGCACAGACAAAT
TACAGCCGCAAGTGCGTGTCGAGTCTCTGAACAATACTATTCCTGTGATTCCTTTAGCGCATATCCAGCAATGGCTGGAA
CGCTATACTGTTCTGCCTGCAGATTCTGTTGAAGGCACACCTTATATCCTCGGTACAGCCGATCAGCGCGTACTGGCAGG
TAAAGGCCAGAAAGTGTATGCACGTGGTAATGGCCTGCAAGTGGGTCAACGCTATGCGGTTTACCGTGAAGCTGAGCCAT
ATGTCTTCACCGATGCCAACGGTAAGAAATACACCGTTGCACTTGAACTACAACAAGTCGCTTCCGGTATTGCAGTACGT
AGTGAAGGCGATGTCACTACCCTGGAATTAACCGACAGCTACAATGCCGAAGTGCGTCGTGGTGACCGTGTTCTACCAGA
ATACGATCCAATGCTGCCTACCCTGTTCTATCCAGTGAATGCAGAAAACGTGACTAACGGTGGTCAGATCGTCCGTGTCC
TTGGTTCGATTGGTACCGCAGCGCGTCATAGTGTCGTAACGATTGACCGCGGTACAGCACACGGCGTGCAGTCTGGTCAT
GTGTTCAGTGTAAACCAGCAAGGTGAAATCGTGACTGATCCGAAAACCAAAGAGCGCGTGCAGCTTCCAGGTGAGCGTAT
TGGTAACGTGATGGTCTTCAAAACCTTTGACCAGCTGAGCTACGCCTACGTCTTGGATAGCGAACTGCCAATCAAGGTTG
GTGCAAGCATTCAGCCACCACTGCTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

69.351

100

0.695

Multiple sequence alignment