Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   EL238_RS03030 Genome accession   NZ_LR134507
Coordinates   588429..588812 (+) Length   127 a.a.
NCBI ID   WP_002898550.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC12851     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 583429..593812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL238_RS03010 (NCTC12851_00611) - 583508..585442 (-) 1935 WP_004309024.1 ribonuclease R family protein -
  EL238_RS03015 (NCTC12851_00612) ilvC 585561..586583 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  EL238_RS03020 (NCTC12851_00613) - 586587..587669 (+) 1083 WP_004309026.1 divergent polysaccharide deacetylase family protein -
  EL238_RS03025 (NCTC12851_00614) dprA 587659..588432 (+) 774 WP_002898548.1 DNA-processing protein DprA Machinery gene
  EL238_RS03030 (NCTC12851_00615) dprB 588429..588812 (+) 384 WP_002898550.1 Holliday junction resolvase RuvX Machinery gene
  EL238_RS03035 (NCTC12851_00616) - 588841..589680 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  EL238_RS03040 (NCTC12851_00617) msrA 589856..590353 (-) 498 WP_002898554.1 peptide-methionine (S)-S-oxide reductase MsrA -
  EL238_RS03045 (NCTC12851_00618) ppa 590394..590912 (-) 519 WP_002852138.1 inorganic diphosphatase -
  EL238_RS03050 (NCTC12851_00619) adk 590922..591500 (-) 579 WP_002872374.1 adenylate kinase -
  EL238_RS03055 (NCTC12851_00620) aspS 591497..593248 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14144.66 Da        Isoelectric Point: 9.0848

>NTDB_id=1002993 EL238_RS03030 WP_002898550.1 588429..588812(+) (dprB) [Campylobacter jejuni strain NCTC12851]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGVANTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=1002993 EL238_RS03030 WP_002898550.1 588429..588812(+) (dprB) [Campylobacter jejuni strain NCTC12851]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449