Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABEF79_RS01295 Genome accession   NZ_CP156810
Coordinates   266868..267203 (+) Length   111 a.a.
NCBI ID   WP_227504128.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7454     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 261868..272203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF79_RS01270 (ABEF79_01270) hemC 262559..263479 (+) 921 WP_034588049.1 hydroxymethylbilane synthase -
  ABEF79_RS01275 (ABEF79_01275) - 263486..264265 (+) 780 WP_347454647.1 uroporphyrinogen-III synthase -
  ABEF79_RS01280 (ABEF79_01280) - 264262..265092 (+) 831 WP_034588054.1 hypothetical protein -
  ABEF79_RS01285 (ABEF79_01285) - 265099..266292 (+) 1194 WP_034588055.1 hypothetical protein -
  ABEF79_RS01290 (ABEF79_01290) - 266306..266734 (+) 429 WP_034588058.1 thioesterase family protein -
  ABEF79_RS01295 (ABEF79_01295) hns 266868..267203 (+) 336 WP_227504128.1 H-NS histone family protein Regulator
  ABEF79_RS01300 (ABEF79_01300) gspN 267384..268127 (+) 744 WP_347454648.1 type II secretion system protein N -
  ABEF79_RS01305 (ABEF79_01305) - 268127..268999 (+) 873 WP_034584208.1 type II secretion system protein N -
  ABEF79_RS01310 (ABEF79_01310) gspD 269038..271278 (+) 2241 WP_347460896.1 type II secretion system secretin GspD -
  ABEF79_RS01315 (ABEF79_01315) - 271343..271996 (+) 654 WP_034584215.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12648.41 Da        Isoelectric Point: 6.4357

>NTDB_id=1002990 ABEF79_RS01295 WP_227504128.1 266868..267203(+) (hns) [Acinetobacter sp. ANC 7454]
MERVMPDITNLSVEELKRLQAEAEALIASKKDQEIEDAYNQVLSIAEKVGMSIEQLLEFGASKRKKSSRKAVEPRYRSKS
NPNDTWTGRGKQPRWLVAELENGAKLEDFLI

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1002990 ABEF79_RS01295 WP_227504128.1 266868..267203(+) (hns) [Acinetobacter sp. ANC 7454]
ATGGAGAGAGTTATGCCTGATATTACTAATTTATCTGTTGAAGAGTTAAAACGTTTGCAAGCTGAAGCTGAAGCGTTAAT
TGCTTCAAAAAAAGATCAAGAGATTGAAGATGCTTATAATCAGGTATTAAGTATTGCTGAAAAAGTCGGCATGAGCATTG
AACAACTGTTAGAGTTTGGTGCGTCTAAACGTAAAAAATCATCTCGTAAAGCAGTAGAGCCACGTTACCGTAGCAAATCT
AATCCAAACGATACCTGGACAGGTCGTGGTAAACAGCCACGCTGGTTGGTGGCTGAACTGGAAAATGGTGCCAAGCTGGA
AGATTTCCTGATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

80.189

95.495

0.766

Multiple sequence alignment