Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABEF88_RS15005 Genome accession   NZ_CP156804
Coordinates   2997242..2997565 (-) Length   107 a.a.
NCBI ID   WP_034584203.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7881     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2992242..3002565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF88_RS14985 (ABEF88_14985) - 2992449..2993102 (-) 654 WP_347453257.1 FHA domain-containing protein -
  ABEF88_RS14990 (ABEF88_14990) gspD 2993167..2995407 (-) 2241 WP_347453258.1 type II secretion system secretin GspD -
  ABEF88_RS14995 (ABEF88_14995) - 2995446..2996318 (-) 873 WP_034584208.1 type II secretion system protein N -
  ABEF88_RS15000 (ABEF88_15000) gspN 2996318..2997061 (-) 744 WP_347453259.1 type II secretion system protein N -
  ABEF88_RS15005 (ABEF88_15005) hns 2997242..2997565 (-) 324 WP_034584203.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABEF88_RS15010 (ABEF88_15010) - 2997709..2998137 (-) 429 WP_347453260.1 thioesterase family protein -
  ABEF88_RS15015 (ABEF88_15015) - 2998151..2999344 (-) 1194 WP_347453261.1 heme biosynthesis protein HemY -
  ABEF88_RS15020 (ABEF88_15020) - 2999351..3000181 (-) 831 WP_034588054.1 hypothetical protein -
  ABEF88_RS15025 (ABEF88_15025) - 3000178..3000957 (-) 780 WP_347453262.1 uroporphyrinogen-III synthase -
  ABEF88_RS15030 (ABEF88_15030) hemC 3000964..3001884 (-) 921 WP_347453263.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12132.78 Da        Isoelectric Point: 6.4223

>NTDB_id=1002987 ABEF88_RS15005 WP_034584203.1 2997242..2997565(-) (hns) [Acinetobacter thermotolerans strain ANC 7881]
MPDITNLSVEELKRLQAEAEALIASKKDQEIEDAYNQVLSIAEKVGMSIEQLLEFGASKRKKSSRKAVEPRYRSKSNPND
TWTGRGKQPRWLVAELENGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1002987 ABEF88_RS15005 WP_034584203.1 2997242..2997565(-) (hns) [Acinetobacter thermotolerans strain ANC 7881]
ATGCCTGATATTACTAATTTATCTGTTGAAGAGTTAAAACGTTTGCAAGCTGAAGCTGAAGCGTTAATTGCTTCAAAAAA
AGATCAAGAAATTGAAGATGCTTATAATCAGGTATTAAGTATTGCGGAAAAAGTCGGCATGAGCATTGAACAACTGTTAG
AGTTTGGTGCATCTAAACGCAAAAAATCCTCTCGTAAAGCAGTAGAGCCACGTTACCGTAGCAAATCTAATCCAAACGAT
ACCTGGACAGGTCGTGGTAAACAGCCACGCTGGTTGGTTGCTGAACTGGAAAATGGTGCCAAGCTGGAAGATTTCCTGAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

80.189

99.065

0.794

Multiple sequence alignment