Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABEF88_RS01200 Genome accession   NZ_CP156804
Coordinates   248695..249849 (-) Length   384 a.a.
NCBI ID   WP_347453430.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7881     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 245995..248030 248695..249849 flank 665


Gene organization within MGE regions


Location: 245995..249849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF88_RS01185 (ABEF88_01185) tnpC 245995..247620 (-) 1626 WP_347453082.1 IS66 family transposase -
  ABEF88_RS01190 (ABEF88_01190) tnpB 247695..248030 (-) 336 WP_171455698.1 IS66 family insertion sequence element accessory protein TnpB -
  ABEF88_RS01195 (ABEF88_01195) tnpA 248027..248410 (-) 384 WP_005404026.1 IS66-like element accessory protein TnpA -
  ABEF88_RS01200 (ABEF88_01200) tsaP 248695..249849 (-) 1155 WP_347453430.1 LysM peptidoglycan-binding domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42058.14 Da        Isoelectric Point: 8.8397

>NTDB_id=1002950 ABEF88_RS01200 WP_347453430.1 248695..249849(-) (tsaP) [Acinetobacter thermotolerans strain ANC 7881]
MKKVLKGMPSFSALGFKNQMLALAVCVGVSMGTISTADAAIARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCTGIINRYLGTDKLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTVLPADSVEGTPYILGTADQRVLAGKGQKVYARGNGLQVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENVTNGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQSGH
VFSVNQQGEIVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLDSELPIKVGASIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1002950 ABEF88_RS01200 WP_347453430.1 248695..249849(-) (tsaP) [Acinetobacter thermotolerans strain ANC 7881]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTCGCACTCGCCGTGTGTGT
GGGTGTCAGTATGGGGACTATTTCAACCGCAGACGCAGCAATCGCGCGTAATGTGAACCCACCGAGCCTAAAGGCTTCTG
CACCAAACGTGTATGTGGTGAAAAAAGGTGACACATTATGGGATATTTCCAAACGTTTCCTAAAGAATCCAGTGCGCTGG
CCAGAAATCTGGGCAGGCAATAAACATGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTGTTGATGTGTGACTA
TCAGGGCCGTCCAATCATTGGCAAAGATGAAGGTGATGGCTGTACCGGTATCATCAACCGCTACCTCGGCACAGACAAGT
TACAGCCACAAGTACGTGTTGAGTCTCTGAACAATACTATTCCTGTGATTCCTTTAGCGCATATCCAGCAATGGCTGGAA
CGCTATACTGTTCTGCCTGCAGATTCTGTTGAAGGCACACCTTATATCCTCGGTACAGCCGATCAGCGCGTACTGGCAGG
TAAAGGCCAGAAAGTGTATGCACGTGGTAATGGCCTGCAAGTGGGTCAACGCTATGCGGTTTACCGTGAAGCTGAGCCAT
ATGTCTTCACCGATGCCAACGGTAAGAAATACACCGCTGCACTTGAACTACAACAAGTCGCTTCCGGTATTGCAGTACGT
GGTGAAGGCGATGTCACTACCCTGGAATTAACCGACAGCTACAATGCCGAAGTGCGTCGTGGTGACCGTGTTCTACCAGA
ATACGATCCAATGCTGCCTACCCTGTTCTATCCGGTGAATGCAGAAAACGTGACTAACGGTGGTCAGATCGTCCGTGTCC
TTGGTTCGATTGGTACCGCAGCGCGTCATAGTGTCGTAACGATTGACCGCGGTACAGCACACGGCGTGCAGTCTGGTCAT
GTGTTCAGTGTAAACCAGCAAGGTGAAATCGTGACTGATCCGAAAACCAAAGAGCGCGTGCAGCTTCCAGGTGAGCGTAT
TGGTAACGTGATGGTCTTCAAAACCTTTGACCAGCTGAGCTACGCCTACGTCTTGGATAGCGAACTGCCAATCAAGGTTG
GTGCAAGCATTCAGCCACCACTGCTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

69.091

100

0.693

Multiple sequence alignment