Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   EL236_RS03045 Genome accession   NZ_LR134502
Coordinates   588325..588708 (+) Length   127 a.a.
NCBI ID   WP_002898550.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC13257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 583325..593708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL236_RS03025 (NCTC13257_00605) - 583402..585336 (-) 1935 WP_004309024.1 ribonuclease R family protein -
  EL236_RS03030 (NCTC13257_00606) ilvC 585455..586477 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  EL236_RS03035 (NCTC13257_00607) - 586481..587563 (+) 1083 WP_004309026.1 divergent polysaccharide deacetylase family protein -
  EL236_RS03040 dprA 587553..588328 (+) 776 Protein_581 DNA-processing protein DprA -
  EL236_RS03045 (NCTC13257_00610) dprB 588325..588708 (+) 384 WP_002898550.1 Holliday junction resolvase RuvX Machinery gene
  EL236_RS03050 (NCTC13257_00611) - 588737..589576 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  EL236_RS03055 (NCTC13257_00612) msrA 589752..590249 (-) 498 WP_002898554.1 peptide-methionine (S)-S-oxide reductase MsrA -
  EL236_RS03060 (NCTC13257_00613) ppa 590290..590808 (-) 519 WP_002852138.1 inorganic diphosphatase -
  EL236_RS03065 (NCTC13257_00614) adk 590818..591396 (-) 579 WP_002872374.1 adenylate kinase -
  EL236_RS03070 (NCTC13257_00615) aspS 591393..593144 (-) 1752 WP_004309032.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14144.66 Da        Isoelectric Point: 9.0848

>NTDB_id=1002903 EL236_RS03045 WP_002898550.1 588325..588708(+) (dprB) [Campylobacter jejuni strain NCTC13257]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGVANTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=1002903 EL236_RS03045 WP_002898550.1 588325..588708(+) (dprB) [Campylobacter jejuni strain NCTC13257]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment