Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABEF90_RS01090 Genome accession   NZ_CP156793
Coordinates   225303..226457 (-) Length   384 a.a.
NCBI ID   WP_347453430.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7914     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 222412..224447 225303..226457 flank 856


Gene organization within MGE regions


Location: 222412..226457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF90_RS01070 (ABEF90_01070) tnpC 222412..224037 (-) 1626 WP_347453082.1 IS66 family transposase -
  ABEF90_RS01075 (ABEF90_01075) tnpB 224112..224447 (-) 336 WP_171455698.1 IS66 family insertion sequence element accessory protein TnpB -
  ABEF90_RS01080 (ABEF90_01080) tnpA 224444..224827 (-) 384 WP_005404026.1 IS66-like element accessory protein TnpA -
  ABEF90_RS01085 (ABEF90_01085) - 224941..225039 (+) 99 Protein_210 transposase -
  ABEF90_RS01090 (ABEF90_01090) tsaP 225303..226457 (-) 1155 WP_347453430.1 LysM peptidoglycan-binding domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42058.14 Da        Isoelectric Point: 8.8397

>NTDB_id=1002828 ABEF90_RS01090 WP_347453430.1 225303..226457(-) (tsaP) [Acinetobacter thermotolerans strain ANC 7914]
MKKVLKGMPSFSALGFKNQMLALAVCVGVSMGTISTADAAIARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCTGIINRYLGTDKLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTVLPADSVEGTPYILGTADQRVLAGKGQKVYARGNGLQVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENVTNGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQSGH
VFSVNQQGEIVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLDSELPIKVGASIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1002828 ABEF90_RS01090 WP_347453430.1 225303..226457(-) (tsaP) [Acinetobacter thermotolerans strain ANC 7914]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTCGCACTCGCCGTGTGTGT
GGGTGTCAGTATGGGGACTATTTCAACCGCAGACGCAGCAATCGCGCGTAATGTGAACCCACCGAGCCTAAAGGCTTCTG
CACCAAACGTGTATGTGGTGAAAAAAGGTGACACATTATGGGATATTTCCAAACGTTTCCTAAAGAATCCAGTGCGCTGG
CCAGAAATCTGGGCAGGCAATAAACATGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTGTTGATGTGTGACTA
TCAGGGCCGTCCAATCATTGGCAAAGATGAAGGTGATGGCTGTACCGGTATCATCAACCGCTACCTCGGCACAGACAAGT
TACAGCCACAAGTACGTGTTGAGTCTCTGAACAATACTATTCCTGTGATTCCTTTAGCGCATATCCAGCAATGGCTGGAA
CGCTATACTGTTCTGCCTGCAGATTCTGTTGAAGGCACACCTTATATCCTCGGTACAGCCGATCAGCGCGTACTGGCAGG
TAAAGGCCAGAAAGTGTATGCACGTGGTAATGGCCTGCAAGTGGGTCAACGCTATGCGGTTTACCGTGAAGCTGAGCCAT
ATGTCTTCACCGATGCCAACGGTAAGAAATACACCGCTGCACTTGAACTACAACAAGTCGCTTCCGGTATTGCAGTACGT
GGTGAAGGCGATGTCACTACCCTGGAATTAACCGACAGCTACAATGCCGAAGTGCGTCGTGGTGACCGTGTTCTACCAGA
ATACGATCCAATGCTGCCTACCCTGTTCTATCCGGTGAATGCAGAAAACGTGACTAACGGTGGTCAGATCGTCCGTGTCC
TTGGTTCGATTGGTACCGCAGCGCGTCATAGTGTCGTAACGATTGACCGCGGTACAGCACACGGCGTGCAGTCTGGTCAT
GTGTTCAGTGTAAACCAGCAAGGTGAAATCGTGACTGATCCGAAAACCAAAGAGCGCGTGCAGCTTCCAGGTGAGCGTAT
TGGTAACGTGATGGTCTTCAAAACCTTTGACCAGCTGAGCTACGCCTACGTCTTGGATAGCGAACTGCCAATCAAGGTTG
GTGCAAGCATTCAGCCACCACTGCTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

69.091

100

0.693

Multiple sequence alignment