Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   ABEF87_RS11930 Genome accession   NZ_CP156789
Coordinates   2389254..2393750 (-) Length   1498 a.a.
NCBI ID   WP_347455266.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7919     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2384254..2398750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF87_RS11900 (ABEF87_11900) elsL 2385332..2385838 (-) 507 WP_034583302.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  ABEF87_RS11905 (ABEF87_11905) - 2385842..2386240 (-) 399 WP_034583304.1 YbaN family protein -
  ABEF87_RS11910 (ABEF87_11910) - 2386329..2387177 (+) 849 WP_347455263.1 DUF1853 family protein -
  ABEF87_RS11915 (ABEF87_11915) - 2387314..2387463 (+) 150 WP_034583309.1 entericidin A/B family lipoprotein -
  ABEF87_RS11920 (ABEF87_11920) dapE 2387587..2388723 (+) 1137 WP_347455264.1 succinyl-diaminopimelate desuccinylase -
  ABEF87_RS11925 (ABEF87_11925) - 2388792..2389250 (-) 459 WP_347455265.1 hypothetical protein -
  ABEF87_RS11930 (ABEF87_11930) chpA 2389254..2393750 (-) 4497 WP_347455266.1 Hpt domain-containing protein Regulator
  ABEF87_RS11935 (ABEF87_11935) - 2393916..2395988 (-) 2073 WP_034583321.1 methyl-accepting chemotaxis protein -
  ABEF87_RS11940 (ABEF87_11940) - 2396034..2396570 (-) 537 WP_034583323.1 chemotaxis protein CheW -
  ABEF87_RS11945 (ABEF87_11945) - 2396577..2396945 (-) 369 WP_034583325.1 response regulator -
  ABEF87_RS11950 (ABEF87_11950) pilG 2396976..2397359 (-) 384 WP_034583327.1 twitching motility response regulator PilG Regulator
  ABEF87_RS11955 (ABEF87_11955) - 2397679..2398335 (+) 657 WP_347455267.1 hypothetical protein -

Sequence


Protein


Download         Length: 1498 a.a.        Molecular weight: 166920.46 Da        Isoelectric Point: 4.1941

>NTDB_id=1002816 ABEF87_RS11930 WP_347455266.1 2389254..2393750(-) (chpA) [Acinetobacter thermotolerans strain ANC 7919]
MKEILKDLVETTALPEDSYLDQDAEILEIFVEEIEEIFVELNALFPQWLATPDHKETLTTIRRHFHTLKGSGRMVGAKQA
GEIAWTVEDTLNRVLSGTLELTPTIQKFAQATLNVYQYLLYPCFKQTQPLTVDLRPIVLLGQQLQQQQTPEPELEELLQL
ADTLTAEGQYSGLELADTTEETPNVETPVNEVTAEEAIETVETVAEERSDLEETVAIFIEEAEEHLATIYDFLKHENIAK
QDYNSLIRALHTLRGSSSMAQIDQIFDASSKVENLFKTLVQDEIASTSKEIALLQQYSEFVGDYLHLLRQGKTEQLDAIS
ATFDAAWNDYGFITTEDHDAVQSQGLVSRLVELNIDQLLDAEFEFDRRAVEEYPAYIEALSQQAAELVAHTDNRAAVGIH
EFTSQLKAAYDALIHRPVLLQSDYAFELFAQAHQEFIHLFDTLAAGQRVILSAEVEKLLADLSAFVQQEIEEFEPEAAPE
TVVEAPEAAPVATGSVDFAAISQCMDLDRQQSEYDASNRDFDADLLDIFLEEADELLAGIDEDLNTWAREPENTESLNNL
MRYLHTLKGGANMIAATNIGSIAHELESIYERVIRQQIAVSPALIQIVRLVQDSVSDRIQTIRDELIDYPATETINILQN
IQALAAGTATATTAVDTAVVEPVVAVEAESEEDSEEIAVEAESTESVAEISEPEILLDPVEETVVEEVAAASVEPVSEED
ELKAIVAETFREESEEILGNAEKLLEQWFDQRSDRSLLLQLQRAAHSIKGGARMAGDETIATIAYGLETTFEQFAVHHFN
SNAYDSLLQQTWKWLAQAIFKHDYSGFEQIKTALDAIEFVDVTAQLPERLTKTESLDITTGFEFVQGDGTEPPNMMGEWA
ETAASDNSNEMIRISADLVEKMIDLSGENSINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELETQIIAKHGAEN
SRYTDFDPLEMDQYSSLNQLSKSLAESASDLIDFKSTLAEKIRDTEGLLLQQSRIQAEIQESLMRTRLVPFDRMLPRLQR
IVRQTSTTLNRPAELIVQNTEGELDRNILERLVSPFEHMLRNAIDHGLEDTAERIALNKPEVGSIVLNISRQGTDVLISF
SDDGKGIDSEAIRAKAIAKGLLKEEQQVDQEELLQFIFHPGFSTAKEVTQISGRGVGLDVVQSEIKALGGHVSVKSELGK
GTTFTIRVPTTVAVSDALMVKAGDQQYAISLAQIDRIVRIAPTTLETYFNSKDDYFKIDGVNYKLRYLSEFVANQPVPRL
NNIANSLPVLLIKGNNGQSIALLVDQLVGSRAQIVVKPIGQQFANIGVVAGATILGDGSVCLILDGQNVARQAQATQRIK
QVSDQQDLSRRGNARRLVMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDGFEVTNL
VRHHDIHRNLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQELIAAQQG

Nucleotide


Download         Length: 4497 bp        

>NTDB_id=1002816 ABEF87_RS11930 WP_347455266.1 2389254..2393750(-) (chpA) [Acinetobacter thermotolerans strain ANC 7919]
ATGAAAGAAATATTAAAAGACTTAGTTGAAACGACAGCGCTTCCTGAAGATAGTTATCTTGATCAAGATGCTGAAATTTT
AGAAATTTTCGTCGAAGAGATTGAAGAAATCTTTGTCGAGTTAAACGCTTTATTTCCACAGTGGCTTGCCACACCAGATC
ATAAAGAAACACTGACGACCATTCGCCGCCATTTCCATACCTTAAAAGGTTCAGGGCGTATGGTGGGGGCGAAACAGGCC
GGTGAAATTGCCTGGACAGTTGAAGATACCCTCAACCGGGTATTGTCAGGCACACTTGAACTGACACCAACTATTCAAAA
GTTTGCTCAGGCAACTTTGAATGTCTATCAATACCTGTTGTATCCATGCTTTAAACAGACACAACCATTAACCGTGGATC
TGCGCCCAATCGTATTGCTTGGGCAGCAACTGCAACAGCAGCAGACCCCAGAACCAGAATTAGAAGAATTATTACAGCTG
GCAGATACACTGACGGCAGAAGGCCAATACTCTGGTCTTGAACTTGCAGATACAACAGAAGAAACGCCTAACGTTGAAAC
TCCTGTAAATGAGGTTACGGCTGAAGAAGCAATAGAGACTGTTGAAACCGTTGCAGAGGAACGTAGCGATCTGGAAGAAA
CGGTTGCGATCTTTATTGAAGAAGCTGAAGAGCATCTGGCAACGATTTATGACTTCCTGAAGCATGAAAATATTGCCAAG
CAGGATTACAACAGTCTGATTCGTGCGCTGCATACCCTGCGTGGCAGTTCATCTATGGCGCAGATTGACCAGATTTTTGA
TGCCAGCTCTAAGGTTGAAAACCTGTTTAAAACACTGGTTCAAGACGAAATTGCATCGACTTCCAAAGAAATTGCCTTGT
TGCAGCAATATTCTGAATTTGTGGGTGATTATCTGCACCTGTTGCGTCAGGGCAAAACTGAACAACTGGATGCGATTTCT
GCAACTTTTGATGCAGCCTGGAATGACTACGGCTTTATCACTACCGAAGATCATGATGCGGTGCAGTCGCAAGGTTTGGT
ATCCCGTCTGGTTGAACTGAATATCGACCAGTTGCTGGATGCCGAGTTTGAATTTGACCGCCGTGCCGTTGAAGAATATC
CAGCTTATATTGAAGCCTTAAGCCAGCAGGCAGCTGAACTGGTGGCGCATACGGATAACCGTGCAGCTGTGGGTATTCAT
GAATTCACCTCACAGTTAAAAGCGGCTTATGATGCACTGATTCATCGACCAGTGTTGCTGCAAAGCGATTATGCCTTTGA
GCTGTTCGCACAGGCGCATCAGGAATTTATCCACCTGTTCGATACCCTGGCTGCAGGTCAACGCGTGATTCTCAGCGCAG
AAGTTGAAAAACTGTTGGCGGATCTGTCTGCCTTTGTACAGCAAGAGATTGAAGAATTCGAGCCAGAAGCAGCGCCTGAA
ACAGTGGTAGAAGCACCTGAGGCTGCTCCTGTAGCTACAGGTAGTGTTGACTTTGCTGCCATCAGTCAATGTATGGATCT
GGACCGTCAACAGAGCGAATATGATGCTTCCAATCGTGACTTCGATGCAGATCTGCTGGATATCTTCCTGGAAGAAGCCG
ATGAGCTGCTAGCAGGAATTGACGAAGACCTGAATACCTGGGCACGTGAACCAGAAAATACCGAATCACTGAATAACCTG
ATGCGTTATCTGCACACCCTCAAAGGTGGTGCAAACATGATTGCAGCAACCAATATCGGTTCGATTGCGCATGAACTGGA
AAGCATCTATGAACGCGTGATTCGTCAGCAGATTGCGGTATCACCAGCACTGATCCAGATTGTGCGACTGGTACAGGATA
GTGTTTCTGACCGTATCCAGACCATCCGTGATGAACTGATTGATTATCCAGCGACAGAAACCATTAATATCCTGCAAAAC
ATCCAGGCACTGGCTGCGGGTACAGCAACAGCGACTACAGCAGTCGATACTGCAGTGGTTGAACCTGTGGTTGCTGTGGA
AGCAGAATCGGAAGAAGATAGTGAAGAGATTGCTGTTGAAGCTGAAAGCACTGAGTCTGTAGCAGAAATTTCTGAACCGG
AAATTCTGTTAGATCCGGTTGAAGAAACAGTTGTTGAAGAAGTAGCTGCAGCATCAGTTGAACCTGTTTCAGAAGAAGAC
GAACTGAAAGCGATTGTTGCAGAGACGTTCCGCGAAGAATCTGAAGAGATTCTAGGAAATGCTGAGAAGCTGCTGGAACA
ATGGTTCGACCAGCGTAGTGACCGTAGCTTGCTGCTCCAATTACAACGTGCGGCCCACAGTATTAAAGGTGGGGCGCGTA
TGGCAGGCGACGAAACCATCGCAACTATTGCCTATGGTCTGGAAACCACTTTCGAACAGTTCGCGGTTCATCATTTCAAC
TCCAATGCCTACGACAGCCTGTTACAGCAGACCTGGAAATGGCTGGCTCAGGCAATCTTCAAGCATGATTACAGTGGTTT
TGAACAGATCAAGACTGCGTTAGATGCAATTGAGTTTGTCGATGTCACTGCACAGTTGCCGGAACGTCTGACCAAAACTG
AAAGTCTTGATATTACTACTGGCTTTGAATTTGTTCAGGGTGATGGTACTGAACCACCTAATATGATGGGTGAGTGGGCA
GAAACAGCGGCTTCTGACAACAGCAACGAAATGATCCGTATCTCGGCTGATCTGGTTGAGAAGATGATCGATCTGTCGGG
TGAGAATTCGATTAACCGTTCGCGTATCGAGATGGATCTGGGGCAGCTCGGCAATACCCTGAACGAGATGGAACTGGCGA
TCAAGCGTCTGGCCGATCAGTTACGCCGAATGGAAGGCGAGCTGGAAACCCAGATTATTGCCAAGCACGGTGCTGAAAAC
TCGCGCTATACCGACTTCGACCCATTGGAGATGGACCAGTATTCCTCTCTGAACCAGCTGTCGAAATCGCTGGCTGAATC
TGCATCGGATTTAATCGACTTCAAGTCAACGCTGGCGGAAAAAATCCGTGATACCGAAGGCCTGTTACTGCAACAGTCAC
GTATTCAAGCTGAAATTCAGGAAAGCTTGATGCGTACCCGTCTGGTACCATTCGACCGTATGTTGCCTCGTCTGCAACGT
ATCGTTCGTCAGACTTCGACCACCTTGAACCGTCCGGCCGAACTGATTGTTCAGAATACAGAAGGTGAACTGGATCGTAA
TATTCTGGAACGTCTGGTCAGTCCGTTTGAGCACATGCTGCGTAACGCGATCGACCATGGTCTGGAAGATACCGCAGAGC
GTATTGCGCTGAACAAGCCGGAAGTGGGTTCGATTGTACTGAACATCAGCCGTCAGGGTACTGATGTACTCATCTCCTTT
AGTGATGATGGTAAAGGGATTGACTCAGAAGCGATCCGTGCCAAAGCCATTGCGAAAGGCTTGCTGAAAGAAGAGCAGCA
GGTGGATCAGGAAGAGCTGTTGCAGTTCATCTTCCATCCAGGCTTCAGTACTGCGAAAGAGGTCACCCAGATTTCTGGTC
GTGGTGTGGGACTGGACGTGGTACAAAGCGAGATCAAGGCGCTCGGTGGTCATGTTTCAGTGAAATCTGAACTGGGTAAA
GGCACGACCTTTACCATTCGCGTACCGACTACAGTAGCAGTCAGCGATGCCCTGATGGTGAAAGCTGGCGATCAGCAGTA
TGCAATTTCTCTGGCACAGATCGACCGTATCGTGCGTATTGCACCAACCACTCTGGAAACTTACTTCAACAGTAAAGATG
ACTACTTCAAGATTGATGGCGTGAACTACAAACTGCGTTATCTGTCTGAGTTTGTTGCCAATCAGCCAGTGCCACGTCTG
AATAACATCGCGAACTCACTGCCAGTGTTGCTGATCAAAGGCAACAATGGTCAGAGTATTGCCTTGCTGGTAGACCAGTT
AGTCGGTTCACGTGCACAGATTGTGGTGAAACCAATTGGCCAGCAGTTTGCCAATATTGGGGTAGTTGCCGGTGCAACAA
TTCTCGGCGATGGTAGTGTCTGCCTGATTCTCGACGGTCAGAATGTTGCCCGTCAGGCACAGGCAACACAACGCATCAAA
CAGGTATCCGATCAGCAGGATCTGTCACGTCGTGGTAATGCCCGCCGTCTGGTGATGATCGTCGATGACTCCGTAACCGT
GCGTAAGGTCACTTCGCGTCTGCTCGAACGTCAGGGTTACGATGTGGTAACCGCCAAAGATGGTGTGGATGCAATTGAGC
AGCTGGAAAATGTTCGTCCGGATCTGATGCTGCTGGATATCGAGATGCCACGCATGGATGGTTTCGAAGTGACCAATCTG
GTACGCCACCACGATATTCACCGCAACTTGCCAATTATCATGATTACATCACGTACTGGCGAGAAGCATCGTGAACGTGC
CTTCAGCTTGGGCGTCACCCATTATATGGGTAAACCGTTCCAGGAAGCTGAACTGCTTGCCAATATTCAAGAACTAATCG
CTGCTCAACAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.992

100

0.624


Multiple sequence alignment