Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABEF87_RS01100 Genome accession   NZ_CP156789
Coordinates   219236..220390 (-) Length   384 a.a.
NCBI ID   WP_347453430.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7919     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 214236..225390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF87_RS01075 (ABEF87_01075) - 214709..215068 (-) 360 WP_347453426.1 RcnB family protein -
  ABEF87_RS01080 (ABEF87_01080) - 215280..215825 (-) 546 WP_347453427.1 glutathione peroxidase -
  ABEF87_RS01085 (ABEF87_01085) - 216044..216943 (+) 900 WP_347453428.1 DMT family transporter -
  ABEF87_RS01090 (ABEF87_01090) - 217383..217958 (-) 576 WP_347453429.1 Sua5/YciO/YrdC/YwlC family protein -
  ABEF87_RS01095 (ABEF87_01095) dprA 218000..219139 (-) 1140 WP_347455451.1 DNA-processing protein DprA Machinery gene
  ABEF87_RS01100 (ABEF87_01100) tsaP 219236..220390 (-) 1155 WP_347453430.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABEF87_RS01105 (ABEF87_01105) def 220512..221042 (+) 531 WP_034582549.1 peptide deformylase -
  ABEF87_RS01110 (ABEF87_01110) - 221134..221550 (+) 417 WP_347453431.1 DUF2946 family protein -
  ABEF87_RS01115 (ABEF87_01115) - 221623..223662 (+) 2040 WP_347453432.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42058.14 Da        Isoelectric Point: 8.8397

>NTDB_id=1002786 ABEF87_RS01100 WP_347453430.1 219236..220390(-) (tsaP) [Acinetobacter thermotolerans strain ANC 7919]
MKKVLKGMPSFSALGFKNQMLALAVCVGVSMGTISTADAAIARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCTGIINRYLGTDKLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTVLPADSVEGTPYILGTADQRVLAGKGQKVYARGNGLQVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENVTNGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQSGH
VFSVNQQGEIVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLDSELPIKVGASIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1002786 ABEF87_RS01100 WP_347453430.1 219236..220390(-) (tsaP) [Acinetobacter thermotolerans strain ANC 7919]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTCGCACTCGCCGTGTGTGT
GGGTGTCAGTATGGGGACTATTTCAACCGCAGACGCAGCAATCGCGCGTAATGTGAACCCACCGAGCCTGAAGGCCTCTG
CACCGAACGTGTATGTGGTGAAAAAAGGTGACACATTATGGGATATTTCCAAACGTTTCCTAAAGAATCCGGTGCGCTGG
CCAGAGATCTGGGCCGGCAATAAACATGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTGTTGATGTGTGACTA
TCAGGGTCGCCCAATCATTGGTAAAGATGAAGGTGATGGCTGTACCGGGATTATCAACCGTTACCTCGGCACAGACAAAT
TACAGCCGCAAGTGCGTGTCGAGTCTCTGAACAATACTATTCCTGTGATTCCTTTAGCGCATATCCAGCAATGGCTGGAA
CGCTATACTGTTCTGCCTGCAGATTCTGTTGAAGGCACACCTTATATCCTCGGTACAGCCGATCAGCGCGTACTGGCAGG
TAAAGGCCAGAAAGTGTATGCACGTGGTAATGGCCTGCAAGTGGGTCAACGCTATGCGGTTTACCGTGAAGCTGAGCCAT
ATGTCTTCACCGATGCCAACGGTAAGAAATACACCGCTGCACTTGAACTACAACAAGTCGCTTCCGGTATTGCAGTACGT
GGTGAAGGCGATGTCACTACCCTGGAATTAACCGACAGCTACAATGCCGAAGTGCGTCGTGGTGACCGTGTTCTACCAGA
ATACGATCCAATGCTGCCTACCCTGTTCTATCCAGTGAATGCAGAAAACGTGACTAACGGTGGTCAGATCGTCCGTGTCC
TTGGTTCGATTGGTACCGCAGCGCGTCATAGTGTCGTAACGATTGACCGCGGTACAGCACACGGCGTGCAGTCTGGTCAT
GTGTTCAGTGTAAACCAGCAAGGTGAAATCGTGACTGATCCGAAAACCAAAGAGCGCGTGCAGCTTCCAGGTGAGCGTAT
TGGTAACGTGATGGTCTTCAAAACCTTTGACCAGCTGAGCTACGCCTACGTCTTGGATAGCGAACTGCCAATCAAGGTTG
GTGCAAGCATTCAGCCACCACTGCTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

69.091

100

0.693

Multiple sequence alignment