Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL232_RS06870 Genome accession   NZ_LR134498
Coordinates   1264813..1266153 (+) Length   446 a.a.
NCBI ID   WP_002858434.1    Uniprot ID   Q9PN90
Organism   Campylobacter jejuni strain NCTC13265     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1259813..1271153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL232_RS06845 (NCTC13265_01389) - 1260641..1261198 (-) 558 WP_002856055.1 DedA family protein -
  EL232_RS06850 (NCTC13265_01390) rny 1261207..1262760 (-) 1554 WP_002858133.1 ribonuclease Y -
  EL232_RS06855 - 1262681..1263307 (-) 627 WP_002875342.1 5-formyltetrahydrofolate cyclo-ligase -
  EL232_RS06860 (NCTC13265_01391) - 1263390..1263947 (+) 558 WP_002858112.1 TlpA disulfide reductase family protein -
  EL232_RS06865 (NCTC13265_01392) pilA 1263947..1264813 (+) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  EL232_RS06870 (NCTC13265_01393) radA 1264813..1266153 (+) 1341 WP_002858434.1 DNA repair protein RadA Machinery gene
  EL232_RS06875 (NCTC13265_01394) atpB 1266222..1266902 (+) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  EL232_RS06880 - 1266899..1267090 (+) 192 WP_002852856.1 membrane protein -
  EL232_RS06885 (NCTC13265_01395) metF 1267112..1267960 (-) 849 WP_002889826.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  EL232_RS06890 (NCTC13265_01396) metE 1267970..1270234 (-) 2265 WP_040966618.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EL232_RS06895 (NCTC13265_01397) - 1270246..1271016 (-) 771 WP_002857994.1 MetQ/NlpA family ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49024.91 Da        Isoelectric Point: 6.9288

>NTDB_id=1002783 EL232_RS06870 WP_002858434.1 1264813..1266153(+) (radA) [Campylobacter jejuni strain NCTC13265]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1002783 EL232_RS06870 WP_002858434.1 1264813..1266153(+) (radA) [Campylobacter jejuni strain NCTC13265]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGCATGAAAA
CAAGTGAGGCTGTTTGTATTGAAGATGTGGAGTTAGAGCATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCCCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCGTTGATTCTATACAAACTCTATATTCAAATAAAATCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAGCTTATGCGTGTGAGTAAGGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGAGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAGGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTAATGGAGGGATCTCGTGCTTTGGTTTTAGAAGTTCAAGCTTTGGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACGGGCTATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAGCTTGAAATTCCTTTGGGGCA
TTATGATGTATTTGTAAATATTAGTGGCGGAGTAAAAGTAAGCGAAACTGCGGCGGATTTGGCTGTGGTTGCAGCTATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCTAAAGAACTTTCGCAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PN90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.861

100

0.46
  radA Streptococcus pneumoniae Rx1

45.861

100

0.46
  radA Streptococcus pneumoniae D39

45.861

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.861

100

0.46
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.897

97.534

0.457
  radA Streptococcus mitis SK321

45.843

99.776

0.457
  radA Streptococcus mitis NCTC 12261

45.843

99.776

0.457