Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABEF82_RS01090 Genome accession   NZ_CP156787
Coordinates   229417..230571 (-) Length   384 a.a.
NCBI ID   WP_347453430.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7924     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 224417..235571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF82_RS01065 (ABEF82_01065) - 224510..225103 (-) 594 WP_347453425.1 hypothetical protein -
  ABEF82_RS01070 (ABEF82_01070) - 225461..226006 (-) 546 WP_347456123.1 glutathione peroxidase -
  ABEF82_RS01075 (ABEF82_01075) - 226225..227124 (+) 900 WP_347453428.1 DMT family transporter -
  ABEF82_RS01080 (ABEF82_01080) - 227564..228139 (-) 576 WP_347453429.1 Sua5/YciO/YrdC/YwlC family protein -
  ABEF82_RS01085 (ABEF82_01085) dprA 228181..229320 (-) 1140 WP_347456124.1 DNA-processing protein DprA Machinery gene
  ABEF82_RS01090 (ABEF82_01090) tsaP 229417..230571 (-) 1155 WP_347453430.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABEF82_RS01095 (ABEF82_01095) def 230693..231223 (+) 531 WP_034582549.1 peptide deformylase -
  ABEF82_RS01100 (ABEF82_01100) - 231315..231731 (+) 417 WP_347453431.1 DUF2946 family protein -
  ABEF82_RS01105 (ABEF82_01105) - 231804..233843 (+) 2040 WP_347453432.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42058.14 Da        Isoelectric Point: 8.8397

>NTDB_id=1002745 ABEF82_RS01090 WP_347453430.1 229417..230571(-) (tsaP) [Acinetobacter thermotolerans strain ANC 7924]
MKKVLKGMPSFSALGFKNQMLALAVCVGVSMGTISTADAAIARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCTGIINRYLGTDKLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTVLPADSVEGTPYILGTADQRVLAGKGQKVYARGNGLQVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENVTNGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQSGH
VFSVNQQGEIVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLDSELPIKVGASIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1002745 ABEF82_RS01090 WP_347453430.1 229417..230571(-) (tsaP) [Acinetobacter thermotolerans strain ANC 7924]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTCGCACTCGCCGTGTGTGT
GGGTGTCAGTATGGGGACTATTTCAACCGCAGACGCAGCAATCGCGCGTAATGTGAACCCACCGAGCCTAAAGGCTTCTG
CACCAAACGTGTATGTGGTGAAAAAAGGTGACACATTATGGGATATTTCCAAACGTTTCCTAAAGAATCCAGTGCGCTGG
CCAGAAATCTGGGCAGGCAATAAACATGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTGTTGATGTGTGACTA
TCAGGGCCGTCCAATCATTGGCAAAGATGAAGGTGATGGCTGTACCGGTATCATCAACCGCTACCTCGGCACAGACAAGT
TACAGCCACAAGTACGTGTTGAGTCTCTGAACAATACTATTCCTGTGATTCCTTTAGCGCATATCCAGCAATGGCTGGAA
CGCTATACTGTTCTGCCTGCAGATTCTGTTGAAGGCACACCTTATATCCTCGGTACAGCCGATCAGCGCGTACTGGCAGG
TAAAGGCCAGAAAGTGTATGCACGTGGTAATGGCCTGCAAGTGGGTCAACGCTATGCGGTTTACCGTGAAGCTGAGCCAT
ATGTCTTCACCGATGCCAACGGTAAGAAATACACCGCTGCACTTGAACTACAACAAGTCGCTTCCGGTATTGCAGTACGT
GGTGAAGGCGATGTCACTACCCTGGAATTAACCGACAGCTACAATGCCGAAGTGCGTCGTGGTGACCGTGTTCTACCAGA
ATACGATCCAATGCTGCCTACCCTGTTCTATCCGGTGAATGCAGAAAACGTGACTAACGGTGGTCAGATCGTCCGTGTCC
TTGGTTCGATTGGTACCGCAGCGCGTCATAGTGTCGTAACGATTGACCGCGGTACAGCACACGGCGTGCAGTCTGGTCAT
GTGTTCAGTGTAAACCAGCAAGGTGAAATCGTGACTGATCCGAAAACCAAAGAGCGCGTGCAGCTTCCAGGTGAGCGTAT
TGGTAACGTGATGGTCTTCAAAACCTTTGACCAGCTGAGCTACGCCTACGTCTTGGATAGCGAACTGCCAATCAAGGTTG
GTGCAAGCATTCAGCCACCACTGCTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

69.091

100

0.693

Multiple sequence alignment