Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABEF86_RS01485 Genome accession   NZ_CP156780
Coordinates   318735..320957 (-) Length   740 a.a.
NCBI ID   WP_347454665.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7933     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313735..325957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF86_RS01465 (ABEF86_01465) - 313859..314308 (-) 450 WP_034587043.1 DUF2147 domain-containing protein -
  ABEF86_RS01470 (ABEF86_01470) - 314501..315805 (-) 1305 WP_035269493.1 IS4 family transposase -
  ABEF86_RS01475 (ABEF86_01475) hslO 315916..316791 (-) 876 WP_034587856.1 Hsp33 family molecular chaperone HslO -
  ABEF86_RS01480 (ABEF86_01480) - 316842..318695 (-) 1854 WP_347454664.1 cation:proton antiporter -
  ABEF86_RS01485 (ABEF86_01485) priA 318735..320957 (-) 2223 WP_347454665.1 primosomal protein N' Machinery gene
  ABEF86_RS01490 (ABEF86_01490) gspF 321108..322313 (+) 1206 WP_034587860.1 type II secretion system inner membrane protein GspF -
  ABEF86_RS01495 (ABEF86_01495) gspG 322405..322872 (+) 468 WP_347454182.1 type II secretion system major pseudopilin GspG -
  ABEF86_RS01500 (ABEF86_01500) - 323156..323491 (+) 336 WP_034587861.1 hypothetical protein -
  ABEF86_RS01505 (ABEF86_01505) lnt 323659..325221 (-) 1563 WP_034587863.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83697.60 Da        Isoelectric Point: 8.6400

>NTDB_id=1002703 ABEF86_RS01485 WP_347454665.1 318735..320957(-) (priA) [Acinetobacter thermotolerans strain ANC 7933]
MPDQPVSPAPIYRVRVAVPVHLFDCFDYSLSAGQYQQAEVGARVAVSFGRQHLVGVIMEKLPPDAPLDSSFKLKDITELL
DDRAIIDAKVLNLLNWSAQYYQFPIGEVVQSALPTLLRQGKPYNLLARTWKLLDDQAEAKVRRSERQQEAYKILKLHPVG
TTETILNLAGVDTATLKALEKKGICECVLEAQDFSPPPVQLAQMPLTANPEQQHAIQQVLKYKNKYQAFLLDGLTGSGKT
EVYLQIMGKVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVVLGSATPSIDSYALVENGKMQVLELNQRAGAALMPKLHI
LDLKVAQKQHGISLHLIQEMQKRLDKKEQILVFLNRRGYAPVLICDSCGWQAQCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPDHCPSCNHTELKTLGMGTGKVEEQLNELFPNHEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGERKGDVYLQTLRPDHALLNTLVNENYRAFAKQTLVQRQIARM
PPYRYAVMIRCESRDQNLNTEFLQKHAALLRQYQDLDLEIWGPIPAPMERKAGRYQSHMVLLSADRARLHYYVRAWWQAM
LQDKPSSMKLTLDVDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=1002703 ABEF86_RS01485 WP_347454665.1 318735..320957(-) (priA) [Acinetobacter thermotolerans strain ANC 7933]
ATGCCCGATCAGCCTGTTTCCCCTGCTCCGATTTATCGCGTCCGTGTCGCCGTGCCTGTACATCTGTTTGACTGTTTTGA
TTACAGCCTAAGTGCAGGACAATACCAGCAGGCCGAAGTTGGCGCACGCGTGGCAGTATCTTTTGGTCGGCAGCATCTGG
TTGGGGTAATTATGGAAAAATTGCCTCCAGATGCTCCATTGGATAGCAGTTTCAAGCTCAAAGACATTACCGAGCTGCTG
GATGATCGGGCGATTATTGATGCCAAAGTACTCAATCTGCTGAACTGGTCGGCGCAGTATTATCAGTTCCCGATTGGTGA
AGTGGTGCAAAGTGCCCTACCAACATTACTCCGTCAAGGCAAACCTTATAACCTGCTGGCACGTACCTGGAAACTGCTGG
ATGATCAGGCTGAAGCCAAAGTTCGTCGTTCCGAACGTCAGCAAGAAGCCTATAAGATTTTAAAACTGCATCCTGTCGGT
ACTACAGAAACCATATTGAATCTGGCGGGTGTTGATACCGCAACCCTGAAGGCTTTAGAGAAAAAAGGTATTTGTGAATG
TGTGCTGGAAGCGCAGGATTTTAGCCCACCACCTGTTCAGCTGGCACAGATGCCACTGACTGCAAACCCGGAACAGCAGC
ATGCCATTCAGCAGGTATTAAAATACAAAAATAAATACCAGGCTTTTTTGCTGGATGGCCTGACCGGCAGCGGCAAGACC
GAAGTCTATTTACAGATCATGGGAAAGGTACTGAAACAGGGCAAACAAGTGCTGGTCCTGGTACCGGAAATTGGCCTGAC
CCCGCAAACCATCAGTCGTTTCCAATCACGCTTCCATTGCCATATTGCCCTGCTGCATTCTGGCCTGAATGACTCGAAAC
GTCTGCAAGCCTGGCAGGCCGCAGAAACCGGTAAAGCCTCGATCGTACTCGGCACCCGTTCTGCAATTTATACCCCAATG
CCGAATCTGGGCCTGATTATTCTGGATGAAGAACACGACCTGTCTTTTAAACAGCAGGAAGGCTTCCGCTATCATGCTCG
GGACGTGGCCCTGTATCGTGGACATTTACAGCAATGTCCCGTCGTGCTCGGTTCTGCCACGCCAAGCATCGACAGTTATG
CATTAGTGGAAAATGGCAAGATGCAGGTGCTGGAACTGAACCAGCGTGCCGGTGCGGCATTGATGCCAAAACTGCATATT
CTGGACCTGAAAGTTGCTCAGAAGCAGCATGGCATCAGTCTGCATTTGATTCAGGAAATGCAGAAACGGCTGGATAAAAA
GGAACAGATATTGGTTTTCCTGAACCGTCGTGGTTATGCACCGGTACTGATCTGTGACAGCTGCGGCTGGCAGGCGCAAT
GCCCGCATTGTGATGCGAATTTCACGGTGCACCGCCAGCCTTATCAGCATCTGCATTGCCACCACTGTGGTACCATTCAC
CGCATGCCGGATCATTGTCCGAGCTGTAACCATACCGAACTAAAAACCCTAGGCATGGGCACCGGCAAGGTTGAAGAACA
GCTAAACGAACTCTTCCCGAATCATGAGGTGATCCGGGTCGATCGCGACTCGACCAGCCGGGTCGGCAGCTGGCAGAAAA
TCTATGACAAGATTCAGAAAAGCGAACCGGCAATTCTGCTCGGCACCCAAATGTTGGCCAAAGGTCACCATTTCCCTTAT
GTGACGCTGGTGGCAATCCTGGATATTGACTCTGGCCTGCTGAGTGTCGATTTTCGAGCCACGGAACGTACCGCCCAGCT
GATTGTACAGGTGGCGGGCCGTGCTGGCCGTGGTGAACGTAAAGGCGATGTCTATTTACAGACCTTGCGTCCCGACCATG
CTTTGCTGAATACACTAGTCAATGAAAATTACCGTGCTTTCGCCAAACAAACTTTGGTACAACGGCAAATTGCCCGCATG
CCACCCTATCGCTATGCGGTGATGATCCGCTGTGAATCCCGTGACCAGAACTTAAATACTGAATTCCTACAGAAACATGC
CGCGCTGTTGAGGCAATATCAGGACCTTGATCTAGAGATCTGGGGACCAATTCCGGCGCCCATGGAACGCAAGGCGGGAC
GTTACCAATCACATATGGTGCTACTCTCTGCTGATCGCGCCCGCTTGCACTATTATGTCCGGGCATGGTGGCAGGCCATG
CTGCAGGACAAACCCTCTTCCATGAAACTCACGCTGGATGTCGATCCTCAAGAGCTGAGCTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

70.541

100

0.705

Multiple sequence alignment