Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL221_RS05505 Genome accession   NZ_LR134496
Coordinates   1048302..1048850 (+) Length   182 a.a.
NCBI ID   WP_002854048.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC13266     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1043302..1053850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL221_RS05470 (NCTC13266_01089) - 1043490..1043915 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  EL221_RS05475 - 1043979..1044601 (+) 623 Protein_1043 NAD(P)H-dependent oxidoreductase -
  EL221_RS05480 (NCTC13266_01092) - 1044601..1045206 (+) 606 WP_002853752.1 NAD(P)H-dependent oxidoreductase -
  EL221_RS05485 (NCTC13266_01093) pgsA 1045331..1045867 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL221_RS05490 (NCTC13266_01094) rseP 1045864..1046970 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  EL221_RS05495 (NCTC13266_01095) - 1046963..1047829 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  EL221_RS05500 (NCTC13266_01096) rpsF 1047916..1048293 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  EL221_RS05505 (NCTC13266_01097) ssb 1048302..1048850 (+) 549 WP_002854048.1 single-stranded DNA-binding protein Machinery gene
  EL221_RS05510 (NCTC13266_01098) rpsR 1048861..1049121 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  EL221_RS05515 (NCTC13266_01099) lon 1049181..1051556 (-) 2376 WP_002853487.1 endopeptidase La -
  EL221_RS05520 (NCTC13266_01100) - 1051573..1052220 (-) 648 WP_126623889.1 outer membrane protein assembly factor BamD -
  EL221_RS05525 (NCTC13266_01101) fliW 1052381..1052770 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  EL221_RS05530 (NCTC13266_01102) proC 1052770..1053501 (+) 732 WP_002854026.1 pyrroline-5-carboxylate reductase Machinery gene
  EL221_RS05535 (NCTC13266_01103) ctsT 1053498..1053800 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20626.52 Da        Isoelectric Point: 5.0431

>NTDB_id=1002675 EL221_RS05505 WP_002854048.1 1048302..1048850(+) (ssb) [Campylobacter jejuni strain NCTC13266]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1002675 EL221_RS05505 WP_002854048.1 1048302..1048850(+) (ssb) [Campylobacter jejuni strain NCTC13266]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39

Multiple sequence alignment