Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABEF85_RS01170 Genome accession   NZ_CP156776
Coordinates   245593..245916 (+) Length   107 a.a.
NCBI ID   WP_034584203.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7955     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 240593..250916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF85_RS01145 (ABEF85_01145) hemC 241272..242192 (+) 921 WP_034588049.1 hydroxymethylbilane synthase -
  ABEF85_RS01150 (ABEF85_01150) - 242199..242978 (+) 780 WP_347454647.1 uroporphyrinogen-III synthase -
  ABEF85_RS01155 (ABEF85_01155) - 242975..243805 (+) 831 WP_034588054.1 hypothetical protein -
  ABEF85_RS01160 (ABEF85_01160) - 243812..245005 (+) 1194 WP_034588055.1 hypothetical protein -
  ABEF85_RS01165 (ABEF85_01165) - 245019..245447 (+) 429 WP_034588058.1 thioesterase family protein -
  ABEF85_RS01170 (ABEF85_01170) hns 245593..245916 (+) 324 WP_034584203.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABEF85_RS01175 (ABEF85_01175) gspN 246097..246840 (+) 744 WP_347454648.1 type II secretion system protein N -
  ABEF85_RS01180 (ABEF85_01180) - 246840..247712 (+) 873 WP_034584208.1 type II secretion system protein N -
  ABEF85_RS01185 (ABEF85_01185) gspD 247751..249991 (+) 2241 WP_347454649.1 type II secretion system secretin GspD -
  ABEF85_RS01190 (ABEF85_01190) - 250056..250709 (+) 654 WP_034584215.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12132.78 Da        Isoelectric Point: 6.4223

>NTDB_id=1002620 ABEF85_RS01170 WP_034584203.1 245593..245916(+) (hns) [Acinetobacter thermotolerans strain ANC 7955]
MPDITNLSVEELKRLQAEAEALIASKKDQEIEDAYNQVLSIAEKVGMSIEQLLEFGASKRKKSSRKAVEPRYRSKSNPND
TWTGRGKQPRWLVAELENGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1002620 ABEF85_RS01170 WP_034584203.1 245593..245916(+) (hns) [Acinetobacter thermotolerans strain ANC 7955]
ATGCCTGATATTACTAATTTATCTGTTGAAGAGTTAAAACGTTTGCAAGCTGAAGCTGAAGCGTTAATTGCTTCAAAAAA
AGATCAAGAGATTGAAGATGCTTATAATCAGGTATTAAGTATTGCTGAAAAAGTCGGCATGAGCATTGAACAACTGTTAG
AGTTTGGTGCGTCTAAACGTAAAAAATCATCTCGTAAAGCAGTAGAGCCACGTTACCGTAGCAAATCTAATCCAAACGAT
ACCTGGACAGGTCGTGGTAAACAGCCACGCTGGTTGGTGGCTGAACTGGAAAATGGTGCCAAGCTGGAAGATTTCCTGAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

80.189

99.065

0.794

Multiple sequence alignment