Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABEF80_RS13725 Genome accession   NZ_CP156772
Coordinates   2824944..2825267 (-) Length   107 a.a.
NCBI ID   WP_034584203.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7970     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2819944..2830267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF80_RS13705 (ABEF80_13705) - 2820151..2820804 (-) 654 WP_034584215.1 FHA domain-containing protein -
  ABEF80_RS13710 (ABEF80_13710) gspD 2820869..2823109 (-) 2241 WP_347453258.1 type II secretion system secretin GspD -
  ABEF80_RS13715 (ABEF80_13715) - 2823148..2824020 (-) 873 WP_347456630.1 type II secretion system protein N -
  ABEF80_RS13720 (ABEF80_13720) gspN 2824020..2824763 (-) 744 WP_347454648.1 type II secretion system protein N -
  ABEF80_RS13725 (ABEF80_13725) hns 2824944..2825267 (-) 324 WP_034584203.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABEF80_RS13730 (ABEF80_13730) - 2825414..2825842 (-) 429 WP_347456631.1 thioesterase family protein -
  ABEF80_RS13735 (ABEF80_13735) - 2825856..2827049 (-) 1194 WP_034588055.1 hypothetical protein -
  ABEF80_RS13740 (ABEF80_13740) - 2827056..2827886 (-) 831 WP_347456632.1 hypothetical protein -
  ABEF80_RS13745 (ABEF80_13745) - 2827883..2828662 (-) 780 WP_347455373.1 uroporphyrinogen-III synthase -
  ABEF80_RS13750 (ABEF80_13750) hemC 2828669..2829589 (-) 921 WP_034588049.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12132.78 Da        Isoelectric Point: 6.4223

>NTDB_id=1002617 ABEF80_RS13725 WP_034584203.1 2824944..2825267(-) (hns) [Acinetobacter thermotolerans strain ANC 7970]
MPDITNLSVEELKRLQAEAEALIASKKDQEIEDAYNQVLSIAEKVGMSIEQLLEFGASKRKKSSRKAVEPRYRSKSNPND
TWTGRGKQPRWLVAELENGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1002617 ABEF80_RS13725 WP_034584203.1 2824944..2825267(-) (hns) [Acinetobacter thermotolerans strain ANC 7970]
ATGCCTGATATTACTAATTTATCTGTTGAAGAGTTAAAACGTTTGCAAGCTGAAGCTGAAGCGTTAATTGCTTCAAAAAA
AGATCAAGAGATTGAAGATGCTTATAATCAGGTATTAAGTATTGCTGAAAAAGTCGGCATGAGCATTGAACAACTGTTAG
AGTTTGGTGCGTCTAAACGTAAAAAATCATCTCGTAAAGCAGTAGAGCCACGTTACCGTAGCAAATCTAATCCAAACGAT
ACCTGGACAGGTCGTGGTAAACAGCCACGCTGGTTGGTGGCTGAACTGGAAAATGGTGCCAAGCTGGAAGATTTCCTGAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

80.189

99.065

0.794

Multiple sequence alignment