Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABEF80_RS09085 | Genome accession | NZ_CP156772 |
| Coordinates | 1860946..1861296 (-) | Length | 116 a.a. |
| NCBI ID | WP_034587674.1 | Uniprot ID | - |
| Organism | Acinetobacter thermotolerans strain ANC 7970 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1855946..1866296
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABEF80_RS09055 (ABEF80_09055) | tadA | 1856210..1856731 (-) | 522 | WP_034587661.1 | tRNA adenosine(34) deaminase TadA | - |
| ABEF80_RS09060 (ABEF80_09060) | - | 1856735..1857859 (-) | 1125 | WP_034587659.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABEF80_RS09065 (ABEF80_09065) | ung | 1857856..1858572 (-) | 717 | WP_034587658.1 | uracil-DNA glycosylase | - |
| ABEF80_RS09070 (ABEF80_09070) | - | 1858618..1859214 (-) | 597 | WP_034587657.1 | 6-carboxytetrahydropterin synthase | - |
| ABEF80_RS09075 (ABEF80_09075) | gspK | 1859360..1860307 (-) | 948 | WP_347455864.1 | type II secretion system minor pseudopilin GspK | - |
| ABEF80_RS09080 (ABEF80_09080) | xcpW | 1860317..1860949 (-) | 633 | WP_347455865.1 | type II secretion system protein GspJ | Machinery gene |
| ABEF80_RS09085 (ABEF80_09085) | xcpV | 1860946..1861296 (-) | 351 | WP_034587674.1 | type II secretion system protein GspI | Machinery gene |
| ABEF80_RS09090 (ABEF80_09090) | - | 1861373..1861933 (-) | 561 | WP_034587652.1 | Tfp pilus assembly protein FimT/FimU | - |
| ABEF80_RS09095 (ABEF80_09095) | - | 1861943..1862557 (-) | 615 | WP_034587650.1 | TetR/AcrR family transcriptional regulator | - |
| ABEF80_RS09100 (ABEF80_09100) | - | 1862601..1863374 (-) | 774 | WP_034587648.1 | TatD family hydrolase | - |
| ABEF80_RS09105 (ABEF80_09105) | - | 1863403..1863744 (-) | 342 | WP_034587646.1 | PilZ domain-containing protein | - |
| ABEF80_RS09110 (ABEF80_09110) | - | 1863760..1864746 (-) | 987 | WP_034587644.1 | DNA polymerase III subunit delta' | - |
| ABEF80_RS09115 (ABEF80_09115) | kdsB | 1864761..1865522 (-) | 762 | WP_034587642.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 116 a.a. Molecular weight: 12808.52 Da Isoelectric Point: 7.2028
>NTDB_id=1002607 ABEF80_RS09085 WP_034587674.1 1860946..1861296(-) (xcpV) [Acinetobacter thermotolerans strain ANC 7970]
MVALAIFATAAMALTKVAMQYTQSTAHAILRTKAQFVALNEAAQMEINQEWLTGTSSRRTIQQGETWQIDKKSEPTISPN
VQRVEIQVSIVNADTGQVESGVSSLVFFNHRVNQTQ
MVALAIFATAAMALTKVAMQYTQSTAHAILRTKAQFVALNEAAQMEINQEWLTGTSSRRTIQQGETWQIDKKSEPTISPN
VQRVEIQVSIVNADTGQVESGVSSLVFFNHRVNQTQ
Nucleotide
Download Length: 351 bp
>NTDB_id=1002607 ABEF80_RS09085 WP_034587674.1 1860946..1861296(-) (xcpV) [Acinetobacter thermotolerans strain ANC 7970]
ATGGTGGCACTTGCGATTTTTGCCACTGCAGCGATGGCATTGACCAAGGTCGCGATGCAATATACCCAATCTACGGCACA
TGCCATTTTGCGTACCAAAGCCCAGTTTGTGGCTCTAAATGAAGCTGCACAAATGGAGATTAATCAGGAATGGTTGACTG
GAACTTCATCTCGACGAACTATACAGCAGGGTGAAACCTGGCAGATTGATAAAAAATCTGAACCGACGATTAGTCCCAAT
GTGCAACGTGTGGAGATTCAGGTCAGCATCGTCAATGCAGATACCGGGCAGGTGGAATCAGGTGTCAGTAGTCTGGTGTT
CTTTAATCATCGGGTGAATCAGACACAATGA
ATGGTGGCACTTGCGATTTTTGCCACTGCAGCGATGGCATTGACCAAGGTCGCGATGCAATATACCCAATCTACGGCACA
TGCCATTTTGCGTACCAAAGCCCAGTTTGTGGCTCTAAATGAAGCTGCACAAATGGAGATTAATCAGGAATGGTTGACTG
GAACTTCATCTCGACGAACTATACAGCAGGGTGAAACCTGGCAGATTGATAAAAAATCTGAACCGACGATTAGTCCCAAT
GTGCAACGTGTGGAGATTCAGGTCAGCATCGTCAATGCAGATACCGGGCAGGTGGAATCAGGTGTCAGTAGTCTGGTGTT
CTTTAATCATCGGGTGAATCAGACACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
67.857 |
96.552 |
0.655 |