Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   EL215_RS09175 Genome accession   NZ_LR134481
Coordinates   1840523..1841902 (-) Length   459 a.a.
NCBI ID   WP_126471662.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain NCTC10665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1835523..1846902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL215_RS09160 (NCTC10665_01843) lolA 1836505..1837131 (-) 627 WP_126471658.1 outer membrane lipoprotein chaperone LolA -
  EL215_RS09165 (NCTC10665_01844) - 1837168..1839957 (-) 2790 WP_126471660.1 DNA translocase FtsK -
  EL215_RS09170 (NCTC10665_01845) lrp 1839961..1840440 (-) 480 WP_049356528.1 leucine-responsive transcriptional regulator Lrp -
  EL215_RS09175 (NCTC10665_01846) radA/sms 1840523..1841902 (-) 1380 WP_126471662.1 DNA repair protein RadA Machinery gene
  EL215_RS09180 (NCTC10665_01847) - 1841929..1842951 (-) 1023 WP_126471664.1 inorganic triphosphatase -
  EL215_RS09185 (NCTC10665_01848) - 1843090..1843770 (+) 681 WP_049356522.1 TIGR00153 family protein -
  EL215_RS09190 (NCTC10665_01849) - 1843806..1845068 (+) 1263 WP_049356520.1 inorganic phosphate transporter -
  EL215_RS09195 (NCTC10665_01850) - 1845147..1845755 (+) 609 WP_126471666.1 TIGR04211 family SH3 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49557.10 Da        Isoelectric Point: 8.1129

>NTDB_id=1002584 EL215_RS09175 WP_126471662.1 1840523..1841902(-) (radA/sms) [Haemophilus parainfluenzae strain NCTC10665]
MAKAPKTAYVCNDCGAEFSRWQGQCSACKAWNTISEVRLISASNSAKNDRFSGYAGETRAKIQTLSEISLQETPRFTSGF
KELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAKNMTALYVTGEESLQQVAMRANRLNLPTDKLNMLSETSVEQ
ICNLADQLKPQIIVVDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSL
LLEGEADSRFRTLRSHKNRFGAVNELGVFGMTEQGLREVKNPSAIFLSRGDEQTPGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLEQNRLALLLAVLHRHGGLQMSDQDVFVNVVGGVKVGETGADLALLLALISSFRNRPLPQDLVVFGEVG
LAGEIRPVTSGQERISEAAKHGFKRAIVPFANKPKSAVENMDVFTVKKLADALAILDNF

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1002584 EL215_RS09175 WP_126471662.1 1840523..1841902(-) (radA/sms) [Haemophilus parainfluenzae strain NCTC10665]
ATGGCAAAAGCTCCTAAAACCGCTTATGTATGTAATGATTGTGGCGCTGAATTTTCGCGCTGGCAAGGGCAGTGTTCTGC
CTGTAAAGCGTGGAATACCATTAGTGAAGTGCGGTTAATTTCAGCCTCAAATTCCGCAAAAAATGATCGTTTTAGTGGTT
ATGCAGGAGAAACCCGTGCAAAAATCCAAACACTTTCTGAAATTAGCTTACAAGAAACACCGCGTTTCACCAGTGGATTT
AAAGAATTAGATCGCGTATTAGGCGGCGGGATCGTACCAGGGAGTGCCATTTTAATTGGTGGGCATCCTGGTGCGGGGAA
AAGTACTTTGTTACTTCAAGTGATGTGTGGATTAGCAAAAAATATGACCGCACTTTATGTAACAGGGGAAGAGTCGCTTC
AACAAGTGGCAATGCGGGCTAATCGCTTAAATCTACCGACAGATAAATTAAATATGTTATCTGAAACGTCTGTTGAGCAA
ATTTGTAATTTGGCGGATCAGTTGAAACCTCAAATTATTGTGGTGGATTCGATCCAGGTTATGCACCTTTCAGATATTCA
ATCTTCTCCAGGAAGTGTGGCACAAGTGCGTGAATGTGCCTCTTTCCTGACTCGTTATGCTAAAACACGACAGGTTGCTA
TCATTATGGTTGGGCATGTCACTAAAGACGGCACCCTCGCAGGTCCGAAAGTATTGGAACATGCCATTGACTGTTCGTTA
TTGCTGGAAGGGGAGGCAGATTCCCGTTTCCGTACGTTACGTAGCCATAAAAACCGTTTTGGCGCAGTGAATGAGCTGGG
TGTATTCGGTATGACAGAGCAAGGCCTGCGCGAAGTGAAAAATCCATCGGCGATTTTCTTAAGCCGAGGAGATGAACAAA
CGCCTGGTAGCTCGGTCATGGTACTTTGGGAAGGCACCCGTCCGCTTTTGGTTGAAATTCAAGCATTGGTGGATCATTCC
ATGCTCGCTAATCCGCGTCGTGTGGCAGTAGGACTAGAACAAAATCGTTTAGCCTTATTGCTTGCAGTATTGCATCGCCA
TGGTGGATTACAAATGTCAGATCAAGATGTTTTTGTCAATGTCGTTGGTGGTGTAAAAGTCGGGGAAACTGGGGCGGATC
TTGCATTGTTACTTGCATTAATTTCCAGTTTCCGTAATCGACCGTTGCCACAAGATTTAGTTGTCTTTGGGGAAGTTGGG
TTAGCCGGTGAAATTCGACCGGTAACCAGTGGTCAAGAACGTATTAGTGAAGCGGCAAAACATGGTTTTAAACGCGCGAT
CGTCCCTTTTGCCAATAAGCCGAAAAGTGCGGTTGAGAATATGGACGTTTTTACGGTGAAAAAACTCGCTGATGCACTTG
CCATTTTGGATAATTTCTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(81-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.957

100

0.471
  radA Streptococcus mitis NCTC 12261

44.651

93.682

0.418
  radA Streptococcus pneumoniae Rx1

44.651

93.682

0.418
  radA Streptococcus pneumoniae D39

44.651

93.682

0.418
  radA Streptococcus pneumoniae R6

44.651

93.682

0.418
  radA Streptococcus pneumoniae TIGR4

44.651

93.682

0.418
  radA Streptococcus mitis SK321

44.651

93.682

0.418

Multiple sequence alignment