Detailed information NTG1002584

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABEF80_RS01535
• Genome accession: NZ_CP156772
• Coordinates: 313864..314724 (-)
• Length: 286 a.a.
• NCBI ID: WP_347456716.1
• Uniprot ID: -
• Organism: Acinetobacter thermotolerans strain ANC 7970
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 308864..319724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABEF80_RS01510 (ABEF80_01510)	recN	308981..310642 (-)	1662	WP_347453466.1	DNA repair protein RecN	-
ABEF80_RS01515 (ABEF80_01515)	-	311056..311379 (+)	324	WP_034587531.1	pyrimidine/purine nucleoside phosphorylase	-
ABEF80_RS01520 (ABEF80_01520)	rlmB	311532..312281 (+)	750	WP_347453467.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABEF80_RS01525 (ABEF80_01525)	-	312318..313238 (+)	921	WP_347453468.1	DMT family transporter	-
ABEF80_RS01530 (ABEF80_01530)	coaE	313263..313862 (-)	600	WP_347453469.1	dephospho-CoA kinase	-
ABEF80_RS01535 (ABEF80_01535)	pilD	313864..314724 (-)	861	WP_347456716.1	A24 family peptidase	Machinery gene
ABEF80_RS01540 (ABEF80_01540)	pilC	314724..315953 (-)	1230	WP_347456717.1	type II secretion system F family protein	Machinery gene
ABEF80_RS01545 (ABEF80_01545)	pilB	315985..317694 (-)	1710	WP_347453472.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABEF80_RS01550 (ABEF80_01550)	tpiA	317978..318769 (+)	792	WP_347453473.1	triose-phosphate isomerase	-
ABEF80_RS01555 (ABEF80_01555)	secG	318783..319112 (+)	330	WP_347453474.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31987.31 Da
• Isoelectric Point: 8.0584

>NTDB_id=1002584 ABEF80_RS01535 WP_347456716.1 313864..314724(-) (pilD) [Acinetobacter thermotolerans strain ANC 7970]
MQEFILYFTQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDESKITLSKPASTCPKCQTP
IRWYQNIPLISWLALRGKCGSCHNPISIRYPFIEILTAVCALIVVAVFGPTIQMLFGLVLTYVLIALTFIDFDTQLLPDR
FTLPLAALGLGINSYSIYTSPSSAIWGYIIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKVRKENLPFAFGPYIAIAGWIAFLWGEQIMKAYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=1002584 ABEF80_RS01535 WP_347456716.1 313864..314724(-) (pilD) [Acinetobacter thermotolerans strain ANC 7970]
ATGCAAGAATTTATTTTATATTTCACACAAAACCCGACTGCGCTCTATATCGCAGTCGGGCTTTTTAGCCTCTGTATCGG
CAGTTTTCTAAATGTAGTGATTTACCGCACGCCGAAAATGATGGAACAAGAATGGAGAACAGACTGCCAGCTGTTTTTAC
ACCCAGATCAGCCGATCATTGATGAAAGCAAAATTACTCTCAGCAAACCAGCATCCACTTGTCCGAAATGCCAGACGCCA
ATTCGATGGTATCAGAATATTCCCTTGATCAGTTGGCTGGCACTGCGTGGTAAATGTGGCTCCTGCCATAATCCAATCAG
TATCCGATATCCATTTATTGAGATTCTGACTGCAGTCTGTGCGCTTATTGTTGTGGCTGTGTTCGGTCCAACAATACAGA
TGCTGTTTGGTCTAGTGCTAACTTATGTCCTGATTGCACTCACCTTTATCGACTTCGATACACAGCTCCTACCAGATCGC
TTTACCCTGCCACTCGCTGCACTGGGTCTAGGAATTAATAGCTACAGTATTTATACCTCACCCTCTTCGGCGATCTGGGG
TTATATCATTGGCTTTCTATGCCTTTGGGTAGTGTATTACCTGTTTAAAATCGTGACCGGCAAGGAAGGAATGGGCTATG
GCGACTTCAAATTACTGGCTGCGCTAGGGGCCTGGATGGGCCCACTGATGCTGCCGCTGATCGTATTACTATCCTCACTA
GTCGGTGCCATTATCGGCATCATCCTATTGAAAGTCCGCAAAGAAAACCTGCCTTTTGCCTTTGGCCCTTATATTGCCAT
TGCTGGCTGGATTGCGTTCCTTTGGGGTGAACAGATTATGAAAGCATATTTGGGTCAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	82.105	99.65	0.818
pilD	Acinetobacter baumannii D1279779	81.754	99.65	0.815
pilD	Vibrio cholerae strain A1552	55.805	93.357	0.521
pilD	Vibrio campbellii strain DS40M4	50.896	97.552	0.497
pilD	Neisseria gonorrhoeae MS11	46.715	95.804	0.448