Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABEF83_RS14315 Genome accession   NZ_CP156768
Coordinates   2922996..2924150 (+) Length   384 a.a.
NCBI ID   WP_347453430.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7974     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2925006..2927041 2922996..2924150 flank 856


Gene organization within MGE regions


Location: 2922996..2927041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF83_RS14315 (ABEF83_14315) tsaP 2922996..2924150 (+) 1155 WP_347453430.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABEF83_RS14320 (ABEF83_14320) - 2924414..2924512 (-) 99 Protein_2758 transposase -
  ABEF83_RS14325 (ABEF83_14325) tnpA 2924626..2925009 (+) 384 WP_005404026.1 IS66-like element accessory protein TnpA -
  ABEF83_RS14330 (ABEF83_14330) tnpB 2925006..2925341 (+) 336 WP_171455698.1 IS66 family insertion sequence element accessory protein TnpB -
  ABEF83_RS14335 (ABEF83_14335) tnpC 2925416..2927041 (+) 1626 WP_347453082.1 IS66 family transposase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42058.14 Da        Isoelectric Point: 8.8397

>NTDB_id=1002574 ABEF83_RS14315 WP_347453430.1 2922996..2924150(+) (tsaP) [Acinetobacter thermotolerans strain ANC 7974]
MKKVLKGMPSFSALGFKNQMLALAVCVGVSMGTISTADAAIARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCTGIINRYLGTDKLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTVLPADSVEGTPYILGTADQRVLAGKGQKVYARGNGLQVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENVTNGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQSGH
VFSVNQQGEIVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLDSELPIKVGASIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1002574 ABEF83_RS14315 WP_347453430.1 2922996..2924150(+) (tsaP) [Acinetobacter thermotolerans strain ANC 7974]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTCGCACTCGCCGTGTGTGT
GGGTGTCAGTATGGGGACTATTTCAACCGCAGACGCAGCAATCGCGCGTAATGTGAACCCACCGAGCCTAAAGGCTTCTG
CACCAAACGTGTATGTGGTGAAAAAAGGTGACACATTATGGGATATTTCCAAACGTTTCCTAAAGAATCCAGTGCGCTGG
CCAGAAATCTGGGCAGGCAATAAACATGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTGTTGATGTGTGACTA
TCAGGGCCGTCCAATCATTGGCAAAGATGAAGGTGATGGCTGTACCGGTATCATCAACCGCTACCTCGGCACAGACAAGT
TACAGCCACAAGTACGTGTTGAGTCTCTGAACAATACTATTCCTGTGATTCCTTTAGCGCATATCCAGCAATGGCTGGAA
CGCTATACTGTTCTGCCTGCAGATTCTGTTGAAGGCACACCTTATATCCTCGGTACAGCCGATCAGCGCGTACTGGCAGG
TAAAGGCCAGAAAGTGTATGCACGTGGTAATGGCCTGCAAGTGGGTCAACGCTATGCGGTTTACCGTGAAGCTGAGCCAT
ATGTCTTCACCGATGCCAACGGTAAGAAATACACCGCTGCACTTGAACTACAACAAGTCGCTTCCGGTATTGCAGTACGT
GGTGAAGGCGATGTCACTACCCTGGAATTAACCGACAGCTACAATGCCGAAGTGCGTCGTGGTGACCGTGTTCTACCAGA
ATACGATCCAATGCTGCCTACCCTGTTCTATCCGGTGAATGCAGAAAACGTGACTAACGGTGGTCAGATCGTCCGTGTCC
TTGGTTCGATTGGTACCGCAGCGCGTCATAGTGTCGTAACGATTGACCGCGGTACAGCACACGGCGTGCAGTCTGGTCAT
GTGTTCAGTGTAAACCAGCAAGGTGAAATCGTGACTGATCCGAAAACCAAAGAGCGCGTGCAGCTTCCAGGTGAGCGTAT
TGGTAACGTGATGGTCTTCAAAACCTTTGACCAGCTGAGCTACGCCTACGTCTTGGATAGCGAACTGCCAATCAAGGTTG
GTGCAAGCATTCAGCCACCACTGCTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

69.091

100

0.693

Multiple sequence alignment