Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL215_RS03005 Genome accession   NZ_LR134481
Coordinates   608673..609341 (+) Length   222 a.a.
NCBI ID   WP_126470118.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain NCTC10665     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 603673..614341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL215_RS02980 (NCTC10665_00588) tuf 604136..605320 (+) 1185 WP_005635637.1 elongation factor Tu -
  EL215_RS02985 (NCTC10665_00589) - 605477..606295 (+) 819 WP_126470110.1 Cof-type HAD-IIB family hydrolase -
  EL215_RS02990 (NCTC10665_00590) crcB 606296..606691 (+) 396 WP_126470112.1 fluoride efflux transporter CrcB -
  EL215_RS02995 (NCTC10665_00591) recX 606666..607118 (-) 453 WP_126470114.1 recombination regulator RecX -
  EL215_RS03000 (NCTC10665_00592) recA 607188..608243 (-) 1056 WP_126470116.1 recombinase RecA -
  EL215_RS03005 (NCTC10665_00593) sxy/tfoX 608673..609341 (+) 669 WP_126470118.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25469.73 Da        Isoelectric Point: 10.3445

>NTDB_id=1002553 EL215_RS03005 WP_126470118.1 608673..609341(+) (sxy/tfoX) [Haemophilus parainfluenzae strain NCTC10665]
MKILPIPNDNITKVCDLLNQLIGDVTSKNLFTGYGLFHKQKDMFAVWVNNKVYLRAKDELSIKLKGLGCKSFTTNELNKR
FVLSDYYALTESILKDNVLMRTLIILSITQIRKEKLDFALSNVGRIRDLPNLSIKYERALNKVGIDNVDTLRKIGAENAI
VRLKKADISASEAFYWRLRGALENRNCEFYTEKEKERGLSKLNEILSANGFRRCKRASKKVS

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1002553 EL215_RS03005 WP_126470118.1 608673..609341(+) (sxy/tfoX) [Haemophilus parainfluenzae strain NCTC10665]
ATGAAAATCCTACCGATACCTAATGATAATATTACCAAAGTATGTGATTTGCTAAATCAACTTATTGGAGATGTGACAAG
TAAGAATCTATTTACGGGATATGGCTTGTTTCATAAACAAAAAGATATGTTTGCTGTTTGGGTAAACAATAAAGTTTACT
TGCGAGCTAAGGATGAGCTTTCAATAAAATTAAAAGGACTTGGATGTAAATCTTTTACAACAAATGAACTCAATAAGCGT
TTTGTATTATCTGATTATTATGCTTTAACCGAAAGTATCTTAAAGGATAACGTTCTAATGAGAACGTTGATTATTCTTTC
AATTACTCAAATAAGGAAGGAGAAACTCGATTTTGCGCTATCTAATGTTGGGCGAATTAGGGACTTACCAAATTTATCGA
TAAAGTATGAACGAGCATTAAATAAAGTAGGGATTGACAATGTCGATACTTTACGAAAAATTGGTGCTGAAAATGCGATT
GTTCGTTTGAAGAAAGCGGATATTAGTGCAAGTGAAGCTTTTTATTGGCGACTTCGCGGAGCTTTGGAAAATCGTAATTG
TGAGTTTTACACTGAAAAAGAGAAGGAAAGAGGCCTTAGTAAACTTAATGAAATACTCTCCGCAAATGGATTTAGACGTT
GTAAACGAGCGTCTAAAAAGGTTAGTTAG

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(17-110)

TfoX C-terminal domain (TfoX_C)

(125-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

57.416

94.144

0.541