Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BAMY6639_RS19280 Genome accession   NZ_CP006058
Coordinates   3955411..3955842 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3950411..3960842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS19260 (BAMY6639_20175) spoVS 3950981..3951241 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  BAMY6639_RS19265 (BAMY6639_20185) tdh 3951499..3952545 (+) 1047 WP_039251466.1 L-threonine 3-dehydrogenase -
  BAMY6639_RS19270 (BAMY6639_20190) - 3952558..3953736 (+) 1179 WP_094032442.1 glycine C-acetyltransferase -
  BAMY6639_RS19275 (BAMY6639_20195) miaB 3953879..3955408 (+) 1530 WP_012117585.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BAMY6639_RS19280 (BAMY6639_20200) ymcA 3955411..3955842 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  BAMY6639_RS19285 (BAMY6639_20205) cotE 3956097..3956642 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  BAMY6639_RS19290 (BAMY6639_20210) hexA 3956761..3959346 (+) 2586 WP_007409829.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=100248 BAMY6639_RS19280 WP_003154113.1 3955411..3955842(+) (ymcA) [Bacillus amyloliquefaciens UMAF6639]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=100248 BAMY6639_RS19280 WP_003154113.1 3955411..3955842(+) (ymcA) [Bacillus amyloliquefaciens UMAF6639]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACTCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916

Multiple sequence alignment