Detailed information NTG1002471

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CV024_RS13880
• Genome accession: NZ_CP156745
• Coordinates: 2989518..2990504 (-)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain QY27
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2984518..2995504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV024_RS13860 (CV024_13860)	recX	2984562..2985020 (-)	459	WP_047459347.1	recombination regulator RecX	-
CV024_RS13865 (CV024_13865)	recA	2985090..2986142 (-)	1053	WP_024374201.1	recombinase RecA	Machinery gene
CV024_RS13870 (CV024_13870)	pncC	2986315..2986803 (-)	489	WP_100268899.1	nicotinamide-nucleotide amidase	-
CV024_RS13875 (CV024_13875)	mutS	2986888..2989449 (+)	2562	WP_100268900.1	DNA mismatch repair protein MutS	-
CV024_RS13880 (CV024_13880)	rpoS	2989518..2990504 (-)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
CV024_RS13885 (CV024_13885)	nlpD	2990576..2991511 (-)	936	WP_020429687.1	murein hydrolase activator NlpD	-
CV024_RS13890 (CV024_13890)	-	2991511..2992137 (-)	627	WP_020429685.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CV024_RS13895 (CV024_13895)	surE	2992130..2992897 (-)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
CV024_RS13900 (CV024_13900)	truD	2992890..2993936 (-)	1047	WP_100268901.1	tRNA pseudouridine(13) synthase TruD	-
CV024_RS13905 (CV024_13905)	ispF	2993968..2994444 (-)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CV024_RS13910 (CV024_13910)	ispD	2994447..2995157 (-)	711	WP_100268902.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CV024_RS13915 (CV024_13915)	ftsB	2995154..2995435 (-)	282	WP_020330423.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=1002471 CV024_RS13880 WP_020429689.1 2989518..2990504(-) (rpoS) [Vibrio fluvialis strain QY27]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=1002471 CV024_RS13880 WP_020429689.1 2989518..2990504(-) (rpoS) [Vibrio fluvialis strain QY27]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAACAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGCCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCCGAAGAAGAAGTGCTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAAACCCGCACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACTGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGACGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGCTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGTTTTGGCTTGTTGGGCTATGAACCTTCGACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGCCGTCTGAGAGAGATCCTGATGAAACAAGGCCTGAATATGGAA
TCGCTGTTCAACGTGGAAAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887