Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CV024_RS13760 Genome accession   NZ_CP156745
Coordinates   2968082..2968600 (-) Length   172 a.a.
NCBI ID   WP_020330449.1    Uniprot ID   S7I1E9
Organism   Vibrio fluvialis strain QY27     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2963082..2973600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV024_RS13735 (CV024_13735) rimM 2963204..2963758 (-) 555 WP_020330455.1 ribosome maturation factor RimM -
  CV024_RS13740 (CV024_13740) rpsP 2963786..2964034 (-) 249 WP_020330454.1 30S ribosomal protein S16 -
  CV024_RS13745 (CV024_13745) ffh 2964260..2965642 (-) 1383 WP_020330453.1 signal recognition particle protein -
  CV024_RS13750 (CV024_13750) - 2965855..2966649 (+) 795 WP_020330452.1 inner membrane protein YpjD -
  CV024_RS13755 (CV024_13755) - 2966739..2968013 (+) 1275 WP_020330450.1 HlyC/CorC family transporter -
  CV024_RS13760 (CV024_13760) luxS 2968082..2968600 (-) 519 WP_020330449.1 S-ribosylhomocysteine lyase Regulator
  CV024_RS13765 (CV024_13765) - 2968626..2969231 (-) 606 WP_024374274.1 hypothetical protein -
  CV024_RS13770 (CV024_13770) gshA 2969233..2970798 (-) 1566 WP_100267997.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18909.87 Da        Isoelectric Point: 5.5627

>NTDB_id=1002468 CV024_RS13760 WP_020330449.1 2968082..2968600(-) (luxS) [Vibrio fluvialis strain QY27]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1002468 CV024_RS13760 WP_020330449.1 2968082..2968600(-) (luxS) [Vibrio fluvialis strain QY27]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ACACTCTTGAGCATCTTTACGCGGGCTTTATGCGCGCGCATCTGAACGGTGCGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCTTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCCTGGTTGGCTGC
AATGCAAGATGTACTGAAAGTGGAAAGTCAGGACAAGATTCCTGAGCTGAACGAATACCAGTGTGGCACGGCAGCGATGC
ACTCGCTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTGCCGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7I1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment