Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CV024_RS09650 Genome accession   NZ_CP156745
Coordinates   2052808..2054232 (+) Length   474 a.a.
NCBI ID   WP_020432568.1    Uniprot ID   -
Organism   Vibrio fluvialis strain QY27     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2047808..2059232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV024_RS09625 (CV024_09625) cobT 2047976..2049004 (-) 1029 WP_100268331.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  CV024_RS09630 (CV024_09630) - 2049018..2049629 (-) 612 WP_100268330.1 flavin reductase family protein -
  CV024_RS09635 (CV024_09635) - 2050014..2050697 (+) 684 WP_100268329.1 NAD(P)H-binding protein -
  CV024_RS09640 (CV024_09640) - 2050899..2052278 (+) 1380 WP_020432565.1 L-cystine transporter -
  CV024_RS09645 (CV024_09645) - 2052358..2052570 (-) 213 WP_075989234.1 hypothetical protein -
  CV024_RS09650 (CV024_09650) sbcB 2052808..2054232 (+) 1425 WP_020432568.1 exodeoxyribonuclease I Machinery gene
  CV024_RS09655 (CV024_09655) - 2054273..2054647 (+) 375 WP_020327588.1 CidA/LrgA family protein -
  CV024_RS09660 (CV024_09660) - 2054638..2055318 (+) 681 WP_075988636.1 LrgB family protein -
  CV024_RS09665 (CV024_09665) cdd 2055520..2056407 (+) 888 WP_020327590.1 cytidine deaminase -
  CV024_RS09670 (CV024_09670) - 2056454..2059162 (-) 2709 WP_100268328.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54430.86 Da        Isoelectric Point: 5.1517

>NTDB_id=1002457 CV024_RS09650 WP_020432568.1 2052808..2054232(+) (sbcB) [Vibrio fluvialis strain QY27]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVLYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIEPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1002457 CV024_RS09650 WP_020432568.1 2052808..2054232(+) (sbcB) [Vibrio fluvialis strain QY27]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTGCGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGCTCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCGGAAGGCATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTCAAACTGGAGCATTTGTCCAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGATGTGATTGC
GACCATTGAACTGGCGAAGAAAGTCAAAGCGGCACAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTACCCATAGCCTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTGCCCGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTAGCGAATCTGGCTCGCATTCGTCAGCATCCGGAAATTCGAGAGAAGCTGGC
AGCCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGATGGATTCTTCTCACCTG
CGGATAAAGCGGCCATGGAGATCATCCGTTCAACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTTCCCTTGGACGCTGGATGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACGCACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

83.298

99.789

0.831

Multiple sequence alignment